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Report for CCDS57480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57480.1 Public Mus musculus 7 Vmn2r34 23 108 98 CCDS HistoryNCBI Gene:100042636Re-query CCDS DB by CCDS ID:57480.1Re-query CCDS DB by GeneID:100042636See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173459.2 ENSMUSP00000133841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173459.2Link to Ensembl Protein Viewer:ENSMUSP00000133841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173459Re-query CCDS DB by Protein ID:ENSMUSP00000133841
Original member Current member NCBI NM_001105066.1 NP_001098536.1 Accepted alive Link to Nucleotide Sequence:NM_001105066.1Link to Protein Sequence:NP_001098536.1Re-query CCDS DB by Nucleotide ID:NM_001105066Re-query CCDS DB by Protein ID:NP_001098536Link to BLAST:NP_001098536.1

Chromosomal Locations for CCDS 57480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7671829 7672733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7675690 7675813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7681662 7681889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7683395 7684207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7685949 7686240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7689202 7689398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGTTCATTTTCATGGAAGTCTTCTTCCTCCTTAATATTACACTTCTCATGGCCAATTTCATTGATCCCA
GGTGCTTTTGGAGAATAAATTTGGATGAAATAATGGATGAATATTTGGGATTATCTTGTGCTTTCATCCT
GGCAGCAGTTCAGACACCCATTGAAAATGATTATTTCAACAAGACTCTTAATGTTCTAAAAACAACTAAA
AACCACAAATATGCTTTGGCATTGGTGTTTGCAATGGATGAAATCAACAGAAATCCTGATCTTTTACCAA
ATATGTCTTTGATTATAAGATACACTTTGGGCCGTTGTGATGGAAAAACTGTAATACCTACACCATATTT
ATTTCGTAAAAAAAAAGAAAGCCCTATCCCTAATTATTTCTGTAATGAAGAGACTATGTGTTCCTATCTG
CTTACAGGACCCCATTGGGAGGTATCTTTAGGTTTCTGGAAGCACATGAACAGCTTCTTATCTCCACGTA
TCCTTCAGCTTACCTATGGACCTTTCCACTCCATCTTCAGTGATGATGAACAATATCCCTATCTCTATCA
GATGGCCCCAAAGGACACATCTCTAGCATTGGCAATGGTCTCCTTCATACTTTACTTTAGCTGGAACTGG
ATTGGCCTTGTCATTCCAGATGATGACCAAGGAAACCAATTTCTTTTAGAGTTGAAGAAACAGAGTGAAA
ACAAGGAAATTTGCTTTGCCTTTGTGAAAATGATCTCTGTTGATGATGTTTCATTTCCACAAAATACTGA
AATGTACTACAACCAAATTGTGATGTCATCCACAAATGTTATTATCATTTATGGAGAAACATACAATTTC
ATTGATTTGATCTTCAGAATGTGGGAACCTCCCATTTTACAGAGAATATGGATCACCACAAAACAATTGA
ATTTCCCTACCAGGAAGACAGACATAAGTCATGGCACATTCTATGGATCACTTACTTTTCTACCCCACCA
TGGCGTGATTTCTGGTTTTAAAAATTTTGTACAGACATGGTTCCATCTCAGAAACACAGATTTATATCTA
GTAATGCAAGACTGGAAATACTTTAACTATGAAGACTCAGCATCTACCTGTAAAATACTGAAGAACAATT
CATCTAATGCCTCATTTGATTGGCTAATGGAACAGAAGTTTGACATGACCTTTAGTGAGAATAGTCATAA
CATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACAGGCTGATAATCAG
GCAATAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTGAAGGTAAACTCCTTTCTAAGAAGGATTTACT
TCACTAATCCTCCTGGGGACAAAGTGTTTATGAAGCAAAGAGTAATAATGCAGGATGAATATGACATTGT
TCACTTTGTGAATCTCTCACAACACCTTGGGATTAAGATGAAGTTAGGAAAGTTCAGCCCATATTTACCA
CATGGTCGACACTCTCACTTATATGTAGACAGGATTGAGTTGGCCACAGGAAGAAGAAAGATGCCATCCT
CTGTGTGCAGTGCTGATTGTAGTCCTGGATTCAGAAGATTATGGAAGGAGGGAATGGCAGCCTGCTGTTT
TGTTTGCAGCCCCTGCCCTGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGTGTGAATTGTCCA
GAATACCAATATGCCAACACAGAACAGAACAAATGTATTCAGAAAGGTGTCACCTTTCTAAGCTATGAAG
ACCCCTTGGGGATGGCACTTGCCTTAATGGCCTTCTGTTTCTCTGCATTCACAGCTGTGGTACTTTGTGT
CTTTGTGAAGCATCATGACACTCCTATTGTGAAGGCCAATAACAGAAGCCTCAGCTACCTATTACTCATG
TCACTCATGTCCTGTTTTCTGTGCTCCTTTCTCTTCATTGGCCTTCCAAACAGAGCCATCTGTGTCTTAC
AGCAAATCACATTTGGAATTGTATTCACTGTGGCTGTTTCCACAGTTCTGGCCAAAACAGTCACTGTGGT
TCTGGCTTTCAAAGTCACAGACCCAGGAAGAAGATTGAGAAACTTCCTGGTATCAGGAACACCCAACTAC
ATTATTCCCATATGTTCCCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTG
TTGATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGTTACTGCATT
CTACTGTATCCTAGGATACTTGGCCTGCCTGGCACTTGGAAACTTCTCTGTGGCTTTCTTGGCCAAGAAT
CTGCCTGACACATTCAATGAAGCCAAGTTCTTGACCTTCAGCATGCTAGTGTTCTGTAGTGTCTGGGTCA
CCTTCCTCCCTGTCTACCATAGCACCAAGGGCAAACACATGGTTGCTGTGGAGATCTTCTCCATCTTGGC
ATCCAGTGCTGGGATCCTTGGATGTATATTTGTACCCAAGATTTATATCATTTTAATGAGACCAGAGAGA
AATTCGACCCAAAAGATCAGGGAAAAATCATATTTCTGA

Translation (852 aa):
MFIFMEVFFLLNITLLMANFIDPRCFWRINLDEIMDEYLGLSCAFILAAVQTPIENDYFNKTLNVLKTTK
NHKYALALVFAMDEINRNPDLLPNMSLIIRYTLGRCDGKTVIPTPYLFRKKKESPIPNYFCNEETMCSYL
LTGPHWEVSLGFWKHMNSFLSPRILQLTYGPFHSIFSDDEQYPYLYQMAPKDTSLALAMVSFILYFSWNW
IGLVIPDDDQGNQFLLELKKQSENKEICFAFVKMISVDDVSFPQNTEMYYNQIVMSSTNVIIIYGETYNF
IDLIFRMWEPPILQRIWITTKQLNFPTRKTDISHGTFYGSLTFLPHHGVISGFKNFVQTWFHLRNTDLYL
VMQDWKYFNYEDSASTCKILKNNSSNASFDWLMEQKFDMTFSENSHNIYNAVHAIAHALHEMNLQQADNQ
AIDNGKGASSHCLKVNSFLRRIYFTNPPGDKVFMKQRVIMQDEYDIVHFVNLSQHLGIKMKLGKFSPYLP
HGRHSHLYVDRIELATGRRKMPSSVCSADCSPGFRRLWKEGMAACCFVCSPCPENEISNETNMDQCVNCP
EYQYANTEQNKCIQKGVTFLSYEDPLGMALALMAFCFSAFTAVVLCVFVKHHDTPIVKANNRSLSYLLLM
SLMSCFLCSFLFIGLPNRAICVLQQITFGIVFTVAVSTVLAKTVTVVLAFKVTDPGRRLRNFLVSGTPNY
IIPICSLLQCVLCAIWLAVSPPFVDIDEHTLHGHIIIVCNKGSVTAFYCILGYLACLALGNFSVAFLAKN
LPDTFNEAKFLTFSMLVFCSVWVTFLPVYHSTKGKHMVAVEIFSILASSAGILGCIFVPKIYIILMRPER
NSTQKIREKSYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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