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Report for CCDS57177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57177.1 Public Mus musculus 2 Rapgef4 23 108 98 CCDS HistoryNCBI Gene:56508Re-query CCDS DB by CCDS ID:57177.1Re-query CCDS DB by GeneID:56508See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028525.5 ENSMUSP00000028525.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028525.5Link to Ensembl Protein Viewer:ENSMUSP00000028525.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028525Re-query CCDS DB by Protein ID:ENSMUSP00000028525
Original member Current member NCBI NM_001204166.1 NP_001191095.1 Accepted alive Link to Nucleotide Sequence:NM_001204166.1Link to Protein Sequence:NP_001191095.1Re-query CCDS DB by Nucleotide ID:NM_001204166Re-query CCDS DB by Protein ID:NP_001191095Link to BLAST:NP_001191095.1

Chromosomal Locations for CCDS 57177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 72055013 72055024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72137242 72137314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72141153 72141172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72174423 72174476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72174802 72174908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72178178 72178299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72179920 72180103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72195637 72195721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72196216 72196276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72198337 72198413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72198759 72198905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72201048 72201163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72205655 72205743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72208086 72208164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72223017 72223167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72224961 72225049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72225749 72225779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72225999 72226077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72226475 72226621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72229006 72229103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72234077 72234202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72234608 72234786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72239064 72239154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72241427 72241477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72242234 72242321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72242728 72242792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72252940 72252994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72256249 72256376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGCTCTACGAGAAATACCGACAGTATATGGCCGGACTTCTGGCTCCTCCCTATGGTGTTATGGAAACGG
GCTCTAACAATGACAGGATTCCTGACAAGGAGAATACACCTCTCATTGAACCCCACGTTCCTCTCCGTCC
TGCTCACACCATTACCAAGGTCCCTTCAGAGAAGATCCTCAGAGCTGGAAAAATTTTACGAATTGCCATT
CTCTCTCGAGCTCCCCACATGATAAGAGACAGAAAGTACCACCTAAAGACATACAGACAATGCTGTGTTG
GGACTGAGCTGGTAGACTGGATGATACAGCAGACATCCTGTGTTCACTCGCGGACTCAAGCTGTTGGCAT
GTGGCAAGTCTTGCTGGAAGATGGTGTCCTCAACCATGTGGACCAGGAGCGCCATTTCCAAGACAAATAT
TTATTTTATCGATTTCTGGATGACGAGCGTGAGGATGCCCCTTTGCCTACTGAGGAAGAGAAGAAGGAGT
GTGATGAAGAACTTCAGGACACCATGCTGCTGCTCTCACAGATGGGCCCTGACGCCCACATGAGAATGAT
CCTGCGAAAACCACCTGGCCAGAGGACTGTGGATGACCTAGAGATTATCTACGACGAGCTCCTTCATATT
AAAGCCTTATCCCATCTCTCTACCACAGTGAAACGGGAGTTAGCAGGTGTTCTCATTTTTGAGTCTCACG
CCAAAGGAGGAACTGTGTTGTTTAACCAGGGGGAAGAAGGTACCTCCTGGTACATCATTCTGAAAGGATC
CGTGAATGTAGTCATTTATGGCAAGGGTGTGGTCTGCACCCTGCACGAAGGAGATGACTTTGGCAAGTTA
GCTCTAGTGAACGATGCTCCAAGAGCTGCCTCCATTGTTCTTCGGGAAGATAATTGTCACTTCCTAAGAG
TCGACAAGGAAGACTTCAATCGGATTCTGAGGGACGTTGAGGCGAATACAGTCAGACTTAAAGAACATGA
CCAAGATGTCTTGGTACTGGAGAAGGTCCCAGCAGGGAACAGAGCTGCTAATCAAGGAAACTCACAGCCT
CAGCAAAAGTATACTGTGATGTCAGGAACACCTGAAAAGATTTTAGAGCATTTTCTAGAAACAATACGCC
TTGAGCCATCGTTGAATGAAGCAACAGATTCGGTTTTAAATGACTTTGTTATGATGCACTGTGTTTTTAT
GCCAAATACCCAGCTTTGCCCTGCCCTTGTGGCCCATTACCACGCACAGCCTTCTCAAGGTACCGAGCAG
GAGAGAATGGATTATGCCCTCAACAACAAGAGGCGGGTCATCCGCTTGGTCCTGCAGTGGGCGGCCATGT
ATGGCGATCTCCTCCAAGAAGATGATGTGGCCATGGCCTTCCTGGAGGAGTTCTATGTGTCTGTATCAGA
TGACGCACGGATGATGGCTGCCTTCAAGGAGCAGCTGCCAGAGCTGGAGAAGATTGTCAAGCAAATCTCA
GAAGACGCAAAAGCTCCACAGAAGAAGCACAAGGTGCTTTTGCAACAGTTCAACACAGGTGACGAGAGGG
CCCAGAAGCGTCAGCCTATTCGTGGCTCTGATGAGGTTTTGTTCAAGGTCTACTGCATCGACCACACCTA
TACTACCATTCGTGTGCCGGTAGCTGCCTCGGTGAAGGAAGTCATCAGTGCAGTAGCTGACAAACTGGGC
TCAGGGGAAGGCCTGATCATCGTCAAGATGAACTCTGGAGGAGAAAAGGTGGTGCTGAAATCTAATGATG
TTTCAGTATTTACGACGCTCACCATTAATGGACGCCTGTTTGCCTGCCCGAGAGAGCAATTCGACTCACT
GACTCCCTTGCCGGAACAGGAAGGCCCGACCACTGGGACAGTGGGAACATTTGAGCTGATGAGCTCGAAA
GACCTGGCGTACCAGATGACAACCTACGATTGGGAACTCTTCAACTGTGTGCATGAGCTGGAGCTAATCT
ACCACACATTTGGAAGGCATAATTTTAAAAAGACCACGGCAAACTTGGATTTGTTCCTGAGGAGGTTTAA
TGAAATTCAGTTTTGGGTTGTCACTGAGGTCTGCCTTTGTTCCCAGCTCAGCAAACGTGTTCAGCTTTTG
AAAAAATTTATCAAGATAGCGGCTCACTGCAAGGAGTACAAAAATCTAAATTCCTTTTTCGCCATCGTCA
TGGGACTCAGCAACGTGGCCGTGAGCCGCTTGGCACTAACGTGGGAGAAACTGCCGAGCAAGTTTAAGAA
GTTCTATGCGGAGTTTGAGAGCTTGATGGATCCTTCCAGAAACCACAGGGCATACAGGCTGACAGCAGCC
AAGCTGGAGCCCCCTCTCATCCCTTTCATGCCCTTGCTTATTAAAGATATGACATTTACTCATGAGGGGA
ACAAGACGTTCATTGACAATCTAGTAAACTTTGAAAAAATGCGCATGATTGCAAACACTGCCAGAACAGT
ACGGTACTACAGGAGCCAGCCCTTCAATCCGGATGCCGCTCAAGCTAATAAGAACCATCAGGATGTCCGG
AGTTATGTACGGCAATTAAATGTGATTGACAACCAGAGAACTTTATCACAGATGTCACACAGATTAGAGC
CTCGAAGGCCATAG

Translation (867 aa):
MLYEKYRQYMAGLLAPPYGVMETGSNNDRIPDKENTPLIEPHVPLRPAHTITKVPSEKILRAGKILRIAI
LSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKY
LFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDELLHI
KALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKL
ALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKVPAGNRAANQGNSQP
QQKYTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQ
ERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQIS
EDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLG
SGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSK
DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLL
KKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA
KLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVR
SYVRQLNVIDNQRTLSQMSHRLEPRRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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