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Report for CCDS57163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57163.1 Public Mus musculus 2 Phyhd1 23 108 98 CCDS HistoryNCBI Gene:227696Re-query CCDS DB by CCDS ID:57163.1Re-query CCDS DB by GeneID:227696See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113645.7 ENSMUSP00000109275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113645.7Link to Ensembl Protein Viewer:ENSMUSP00000109275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113645Re-query CCDS DB by Protein ID:ENSMUSP00000109275
Original member Current member EBI ENSMUST00000154647.7 ENSMUSP00000121371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154647.7Link to Ensembl Protein Viewer:ENSMUSP00000121371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154647Re-query CCDS DB by Protein ID:ENSMUSP00000121371
Original member Current member NCBI NM_001252570.1 NP_001239499.1 Accepted alive Link to Nucleotide Sequence:NM_001252570.1Link to Protein Sequence:NP_001239499.1Re-query CCDS DB by Nucleotide ID:NM_001252570Re-query CCDS DB by Protein ID:NP_001239499Link to BLAST:NP_001239499.1
Original member Current member NCBI NM_001281829.1 NP_001268758.1 Accepted alive Link to Nucleotide Sequence:NM_001281829.1Link to Protein Sequence:NP_001268758.1Re-query CCDS DB by Nucleotide ID:NM_001281829Re-query CCDS DB by Protein ID:NP_001268758Link to BLAST:NP_001268758.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239499.1 291 Q9DB26 291 100% 0 0
NP_001268758.1 291 Q9DB26 291 100% 0 0

Chromosomal Locations for CCDS 57163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30266909 30266941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30269689 30269847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30274470 30274545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30274676 30274723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30277003 30277058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30277148 30277210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30277623 30277644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30279955 30280083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30280171 30280287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30281010 30281136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30281770 30281815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCCTGCCTGAGTCCCTCACAACTCAAGAAGTTCCAGGAGGACGGGTTTCTGCTGTTGGAAGGATTCT
TCACAGCGGATGAGTGTGTGGCCATGCAGCAGAGGATCGGTGAGATTGTAGCTGAGATGGATGTCCCTCT
GCACTGCCGGACAGAATTTTCCACCCAGGAAGATGAGCAACTTCAAACCCAGGGCAAGACAGACTACTTC
TTGAGCAGCGGTGACAAGATCCGATTCTTCTTTGAAAAAGGCGTTTTTGATGAGAAAGGAAATTTCTTGG
TCCCTCCTGAGAAATCTATCAACAAAATTGGCCATGCTCTGCATGCCCATGACCCTGTCTTCAGGAGCAT
CACACATTCTCCCAAGGTGCAGGCTTTGGTTAGAAGTCTGGGCCTCCAGATGCCAGTGGTGGTGCAGAGC
ATGTATATCTTTAAGCAACCTCACTTTGGCGGCGAAGTCTCCCCTCACCAGGATGCTACCTTCCTCTACA
CGGAGCCCCTAGGCCGAGTGTTGGGCCTGTGGATTGCGATGGAGGATGCCATGCTGGAGAACGGTTGCCT
CTGGTTCATCCCTGGCTCCCATACCCGTGGGGTGTCAAGAAGGATGATTCGAGCCCCTTCAGACTCTGGG
CCTGGCACCAGCTTCCTCGGGTCAGATCCAGCCTGGGCTAGCAACCTCTTTGTGCCTTTGCCAGTGAGGA
GAGGGGGTCTGGTTCTGATCCATGGAGAAGTGGTGCATAAGAGTGAGCAGAACCATTCCGACCACTCCCG
CCAGGCCTACACTGTCCACCTCATGGAGGCTGCCGGCACTGTCTGGAGCCCAGGGAATTGGCTCCAGCCC
ACGCCCGAGCTGCCCTTCCCACCACTCTACAGCTAA

Translation (291 aa):
MACLSPSQLKKFQEDGFLLLEGFFTADECVAMQQRIGEIVAEMDVPLHCRTEFSTQEDEQLQTQGKTDYF
LSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSPKVQALVRSLGLQMPVVVQS
MYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIAMEDAMLENGCLWFIPGSHTRGVSRRMIRAPSDSG
PGTSFLGSDPAWASNLFVPLPVRRGGLVLIHGEVVHKSEQNHSDHSRQAYTVHLMEAAGTVWSPGNWLQP
TPELPFPPLYS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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