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Report for CCDS56982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56982.1 Public Mus musculus 15 Rims2 23 108 98 CCDS HistoryNCBI Gene:116838Re-query CCDS DB by CCDS ID:56982.1Re-query CCDS DB by GeneID:116838See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042917.9 ENSMUSP00000048719.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042917.9Link to Ensembl Protein Viewer:ENSMUSP00000048719.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042917Re-query CCDS DB by Protein ID:ENSMUSP00000048719
Original member Current member NCBI NM_001256382.1 NP_001243311.1 Accepted alive Link to Nucleotide Sequence:NM_001256382.1Link to Protein Sequence:NP_001243311.1Re-query CCDS DB by Nucleotide ID:NM_001256382Re-query CCDS DB by Protein ID:NP_001243311Link to BLAST:NP_001243311.1

Chromosomal Locations for CCDS 56982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39198363 39198538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39292102 39292312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39345310 39345620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39436997 39437922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39452224 39452432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39454360 39454479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39456678 39456777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39457764 39457887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39459589 39459635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39462498 39462610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39472334 39472464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39476380 39476551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39478557 39478710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39506966 39507034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39509645 39509801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39511264 39511374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39517806 39517871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39534838 39535017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39535872 39535981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39566943 39567043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39585590 39585762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39616269 39616510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39674940 39675081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39679248 39679360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39679630 39679731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39680989 39681128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39681546 39681764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4719 nt):
ATGTCGGCTCCGCTCGGGCCCCGGGGCCGCCCGGCTCCCACCCCGGCGGCCTCTCAACCTCCTCCGCAGC
CCGAGATGCCGGACCTCAGCCACCTCACGGAAGAGGAGAGGAAAATCATCCTGGCTGTCATGGATCGTCA
GAAGAAAGAAGAGGAGAAGGAGCAGTCCGTGCTCAAAAAGCTGCACCAACAATTTGAAATGTATAAGGAG
CAAGTCAAGAAGATGGGAGAGGAATCGCAGCAGCAGCAAGAGCAGAAGGGTGATGCCCCGACCTGTGGCA
TCTGCCACAAGACAAAATTTGCAGATGGATGCGGCCATAATTGTTCCTATTGCCAAACCAAGTTCTGTGC
TCGATGTGGAGGTCGAGTGTCTTTACGCTCAAACAAGGTTATGTGGGTGTGTAATTTGTGCCGAAAACAA
CAAGAAATCCTCACTAAATCAGGAGCATGGTTTTATAATAGTGGGTCTAACACACTGCAGCAACCTGATC
AAAAGGTTCCTCGAGGGCTTCGAAATGAGGAAGCCCCTCAGGAGAAGAAAGCAAAACTACACGAGCAGCC
CCAGTTCCAAGGAGCCCCAGGTGACTTATCAGTACCTGCAGTTGAGAAAGGCCGAGCTCATGGGCTCACA
AGACAGGATACTATTAAAAATGGATCAGGAGTGAAGCACCAGATTGCCAGTGACATGCCTTCAGACAGAA
AACGAAGTCCATCAGTGTCCAGGGATCAAAATCGAAGATACGAGCAAAGTGAAGAAAGAGAGGACTACTC
ACAGTATGTTCCTTCAGATGGTACAATGCCAAGATCTCCTTCGGATTATGCTGATAGACGATCTCAGCGT
GAGCCTCAATTTTATGAAGAACCTGGTCATTTAAATTACAGGGATTCTAACAGGAGAGGCCATAGACATT
CCAAAGAGTATATTGTGGATGATGAAGATGTGGAGAGCAGAGATGAATATGAAAGACAAAGGAGAGAGGA
GGAATACCAGGCACGCTACAGAAGTGATCCAAATCTGGCCCGGTATCCCGTAAAGCCACAACCCTACGAA
GAACAAATGCGCATCCACGCTGAGGTGTCCAGGGCACGACATGAGAGAAGGCACAGTGATGTTTCTTTGG
CAAACGCTGAACTAGAAGATTCCAGGATTTCTCTGCTAAGGATGGATAGACCATCAAGGCAAAGATCTGT
ATCTGAACGTAGAGCTGCAATGGAAAACCAACGATCGTATTCAATGGAAAGAACTCGAGAGGCTCAGGGA
CAAAGTTCTTATCCACAAAGGACCTCAAATCATAGTCCTCCCACCCCTCGGCGGAGCCCTATACCGCTTG
ATAGACCAGACATGAGGCGCGCTGACTCCCTACGGAAACAGCACCACTTAGATCCCAGCTCTGCTGTGAG
GAAAACGAAGCGAGAAAAAATGGAAACCATGTTAAGGAATGATTCTTTGAGTTCAGACCAGTCCGAGTCA
GTGAGGCCGCCCCCACCAAGGCCTCATAAATCCAAGAAAGGAGGTAAAATGCGCCAGGTTTCACTGAGCA
GCTCGGAGGAGGAGCTGGCATCCACACCTGAGTATACAAGCTGTGATGATGTGGAGCTGGAAAGCGAGAG
TGTGAGTGAGAAAGGGGACAGTCAAAAGGGAAAAAGAAAAACTAGTGAGCAGGGAGTTTTGTCGGATTCT
AACACCAGGTCTGAGAGACAAAAGAAAAGGATGTACTATGGTGGCCACTCTTTGGAAGAGGATTTGGAAT
GGTCTGAGCCTCAGATTAAGGACTCTGGGGTAGATACCTGTAGTAGCACAACCCTTAACGAGGAGCATAG
CCATAGTGATAAGCACCCTGTGACCTGGCAGCCATCCAAAGATGGAGATCGCCTAATTGGTCGTATTTTA
TTAAATAAGCGTTTAAAAGATGGGAGTGTACCTCGAGACTCAGGAGCAATGCTGGGCTTAAAGGTTGTAG
GAGGAAAGATGACTGAATCAGGTCGACTTTGTGCATTTATTACCAAAGTAAAAAAAGGAAGTTTAGCTGA
TACTGTAGGACATCTTAGACCAGGTGATGAAGTCTTGGAATGGAATGGGAGGCTATTGCAAGGAGCCACA
TTTGAGGAAGTTTACAACATTATTCTAGAATCCAAACCTGAACCACAAGTTGAGCTTGTTGTTTCAAGGC
CAATTGGAGATATTCCTAGAATACCTGATAGCACGCATGCACAACTGGAATCCAGTTCTAGCTCATTTGA
ATCTCAAAAAATGGACCGTCCTTCTATATCCGTTACCTCACCCATGAGTCCTGGCATGCTGAGGGATGTC
CCGCAGTTCTTATCTGGACAGCTTTCAATAAAACTATGGTTTGACAAGGTTGGTCACCAGTTGATAGTTA
CAATTTTGGGAGCAAAGGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAGATTTA
CTTCCTTCCAGATAGAAGTGATAAAAATAAGAGAAGAACAAAAACAGTCAAGAAAACTTTGGAACCCAAA
TGGAACCAGACTTTCATTTATTCTCCTGTCCACCGAAGAGAATTCCGTGAACGAATGCTGGAAATTACCC
TTTGGGATCAAGCTAGAGTTCGAGAAGAAGAGAGCGAATTCTTAGGAGAGATTTTAATTGAATTGGAAAC
AGCTTTGCTAGATGATGAGCCGCACTGGTATAAGCTGCAGACCCATGATGTCTCCTCATTGCCACTCCCT
CGCCCTTCCCCATATCTGCCCCGGAGGCAGCTCCATGGAGAGAGCCCAACGCGCAGGCTGCAAAGGTCGA
AGAGAATAAGTGACAGTGAAGTGTCTGACTACGACTGCGAGGATGGCGTGGGAGTAGTGTCAGATTATCG
ACACAATGGCCGCGATCTTCAAAGCTCCACGTTGTCGGTGCCAGAACAAGTCATGTCATCAAATCATTGC
TCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACAAGGTCATGGTCGCCTAGTGCCCCTC
CTCCTCAAAGGAATGTGGAACAGGGGCACCGAGGGACACGTGCTACTGGCCATTACAACACAATTAGCCG
AATGGATAGACACCGTGTCATGGATGACCACTACTCTTCAGATAGAGACAGTCACTTTCTTACTCTACCT
CGCTCCCGACACAGTCAGACCATTGACCATCACCACAGGGATGGAAGGGATTGTGAAGCAGCAGATAGAC
AGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTAGAGCGGACCACCACCCGCTCCAGATC
CTCTGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCT
TCACCTGCCTTATCGAGGTCTCACCCTCGTACCGGGTCTGTCCAGACAAGCCCATCAAGTACTCCGGGAA
CAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACATTGGAGAGAAGTGCTATGGATAT
AGAGGAGAGAAATCGCCAAATGAAACTTAACAAATACAAACAGGTAGCCGGATCAGACCCCAGACTGGAG
CAAGATTACCATTCGAAGTATCGCTCAGGATGGGATCCACATAGAGGGGCAGATACTGTTTCCACTAAAT
CCTCGGACAGTGATGTAAGTGATGTATCTGCGGTTTCAAGGACTAGTAGTGCTTCTCGTTTCAGCAGCAC
AAGCTACATGTCCGTCCAATCAGAGCGGCCGAGAGGAAACAGGAAAATCAGTGTCTTTACATCCAAAATG
CAAAACAGACAGATGGGCGTGTCGGGGAAGAACTTGACCAAAAGCACCAGCATCAGTGGAGACATGTGCT
CACTGGAGAAGAATGACGGCAGCCAGTCCGACACTGCAGTGGGCGCCCTGGGTACCAGTGGCAAGAAGCG
GCGATCTAGCATTGGGGCCAAAATGGTAGCTATTGTTGGTCTCTCACGGAAAAGTCGCAGTGCCTCTCAA
CTCAGCCAAACCGAAGGAGGAGGTAAAAAGCTACGGAGCACTGTTCAGAGAAGCACGGAGACCGGGCTAG
CAGTGGAGATGAGGAACTGGATGACCCGCCAGGCCAGCCGGGAATCCACAGATGGCAGCATGAACAGCTA
TAGCTCGGAAGGAAATCTGATCTTCCCTGGGGTCCGCCTGGCCTCTGACAGCCAGTTCAGTGATTTCCTG
GATGGCCTGGGCCCTGCTCAGCTAGTGGGACGCCAGACCCTGGCTACTCCTGCAATGGGTGACATTCAGG
TGGGAATGATGGATAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCGCGCGGCCTTGTGGTAAAACC
AGGTTCCAAGACACTGCCAGCACCGTATGTCAAGGTGTATCTGTTAGACAACGGAGTCTGCATAGCCAAA
AAGAAAACCAAGGTGGCGAGAAAGACCCTGGAGCCCCTGTACCAGCAGCTCTTGTCCTTCGAGGAGAGCC
CCCAGGGGAGGGTGTTACAGATCATTGTCTGGGGAGATTATGGTCGTATGGATCACAAATCCTTTATGGG
AGTGGCCCAGATACTCTTAGATGAACTGGAACTATCCAACATGGTGATTGGATGGTTCAAACTCTTCCCT
CCTTCCTCCCTAGTAGATCCAACCTTGGCACCTCTGACAAGAAGAGCTTCCCAATCGTCTCTGGAAAGTT
CTACCGGACCTTCTTACTCTCGTTCATAG

Translation (1572 aa):
MSAPLGPRGRPAPTPAASQPPPQPEMPDLSHLTEEERKIILAVMDRQKKEEEKEQSVLKKLHQQFEMYKE
QVKKMGEESQQQQEQKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ
QEILTKSGAWFYNSGSNTLQQPDQKVPRGLRNEEAPQEKKAKLHEQPQFQGAPGDLSVPAVEKGRAHGLT
RQDTIKNGSGVKHQIASDMPSDRKRSPSVSRDQNRRYEQSEEREDYSQYVPSDGTMPRSPSDYADRRSQR
EPQFYEEPGHLNYRDSNRRGHRHSKEYIVDDEDVESRDEYERQRREEEYQARYRSDPNLARYPVKPQPYE
EQMRIHAEVSRARHERRHSDVSLANAELEDSRISLLRMDRPSRQRSVSERRAAMENQRSYSMERTREAQG
QSSYPQRTSNHSPPTPRRSPIPLDRPDMRRADSLRKQHHLDPSSAVRKTKREKMETMLRNDSLSSDQSES
VRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVELESESVSEKGDSQKGKRKTSEQGVLSDS
NTRSERQKKRMYYGGHSLEEDLEWSEPQIKDSGVDTCSSTTLNEEHSHSDKHPVTWQPSKDGDRLIGRIL
LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGAT
FEEVYNIILESKPEPQVELVVSRPIGDIPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMSPGMLRDV
PQFLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK
WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDVSSLPLP
RPSPYLPRRQLHGESPTRRLQRSKRISDSEVSDYDCEDGVGVVSDYRHNGRDLQSSTLSVPEQVMSSNHC
SPSGSPHRVDVIGRTRSWSPSAPPPQRNVEQGHRGTRATGHYNTISRMDRHRVMDDHYSSDRDSHFLTLP
RSRHSQTIDHHHRDGRDCEAADRQPYHRSRSTEQRPLLERTTTRSRSSERPDTNLMRSMPSLMTGRSAPP
SPALSRSHPRTGSVQTSPSSTPGTGRRGRQLPQLPPKGTLERSAMDIEERNRQMKLNKYKQVAGSDPRLE
QDYHSKYRSGWDPHRGADTVSTKSSDSDVSDVSAVSRTSSASRFSSTSYMSVQSERPRGNRKISVFTSKM
QNRQMGVSGKNLTKSTSISGDMCSLEKNDGSQSDTAVGALGTSGKKRRSSIGAKMVAIVGLSRKSRSASQ
LSQTEGGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFL
DGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAK
KKTKVARKTLEPLYQQLLSFEESPQGRVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFKLFP
PSSLVDPTLAPLTRRASQSSLESSTGPSYSRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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