NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56972.1 Public Mus musculus 14 Tdrd3 23 108 98 CCDS HistoryNCBI Gene:219249Re-query CCDS DB by CCDS ID:56972.1Re-query CCDS DB by GeneID:219249See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169504.7 ENSMUSP00000131542.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169504.7Link to Ensembl Protein Viewer:ENSMUSP00000131542.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169504Re-query CCDS DB by Protein ID:ENSMUSP00000131542
Original member Current member NCBI NM_001253755.1 NP_001240684.1 Accepted alive Link to Nucleotide Sequence:NM_001253755.1Link to Protein Sequence:NP_001240684.1Re-query CCDS DB by Nucleotide ID:NM_001253755Re-query CCDS DB by Protein ID:NP_001240684Link to BLAST:NP_001240684.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240684.1 716 Q91W18-2 716 100% 0 0

Chromosomal Locations for CCDS 56972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 87416808 87416848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87457034 87457118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87458757 87458822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87472076 87472236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87474699 87474840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87477390 87477461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87480734 87480883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87485559 87485699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87486192 87486348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87487162 87487287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87505759 87506606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 87511645 87511806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGCCGAGGTGTCCGGCGCCGCGTTGTCCCAGGCGGGTTGGTACCTTTCAGATGAAGGCGTTGAAGCCT
GCACAAGCTCTCCTGGGAAAGGCAGCATAAATGACATCATCCTGATTGCTCTCAATACAGATTTGAGAAC
AATTGGCAAGAAGTTCCTTCCCAGTGACATCAACGGTGGAAAGGTAGAGAAGCTTGAAGGTCCATGTGTC
TTACAAATTCAGAAGGTCCGCAATGTTGCTGCGCCAAAGGATAACGAGGAATCGCAAGCTGCGCCAAGGA
TGCTCCGCGTGCAGATGACGGATGGGCATACAAGTTGTACGGCAGTAGAATTCAGTTATATTTCAAAAAT
AAGCCTGAACACACCACCTGGCACAAAAGTGAAGCTCTCTGGCACTGTGGACATAAAGAACGGATTCCTG
CTCTTAAGTGACTCTAACACCACAGTTCTTGGTGGTGAAGTGGAACACCTAATTGACAAGTGGGCTTTAC
AGAGAAGCTTATTAAAGCATAACAGAAGCAATATTGGAGCTGAAGGTGGCCCACCTCCTTTTCTACCTTT
TGGGCAGAAGTGTGCATCTAACGTCCAAGTGGATAGCAGAGAGCTTGATCGAAGAAAGACATTACAAGTT
TCCCTGCCTGCCAAGCCTGCAAATGATAATGATGAATTTGAAAAGCAAAGAACTGCTGCCATTGCAGAGG
TTGCAAAGAGCAAAGAGACCAAGACATTTGGAGGAGGTGGAGGTGGTGCCAGAAGTAATCTCAATATTGG
TGCTGCTGGTCACCGAAATAGGGAGGTTTTACAGAAGGAAAAGGCTTCCAAGTCAGAGAGCAAGAACGAA
GGTGTCTATAGAGAATTGGTTGATGAGAAAGCCCTGAAACACATAACAGAAATGGGCTTCAGTAAGGAGG
CCTCAAGGCAAGCGCTGATGGATAATGCCAACAACTTAGAAGCAGCACTGAATGTCCTTCTGAACAGCAG
TAAACAGAAGCCTGCTGTGGGCCCTCCTGCTAGAGGAAGAGGGAAAGGCAGGGGTCGAGGACGATCAGAA
GATGAGGAAGACCTGGGAACCGCAAGACCGTCAGCACCAAGCACGTTATTTGATTTCTTGGAGTCTAAAA
TGGGAACTCTGAATGTGGAAGAACCTAAGTCACAGCCACAGCACCTTCATCAAGGACAGCACAGAGGATG
GAATGCCGAGCAAAATGGGATGAAGGACGGCACTCAGTCAAGACATCTTCCTCGAAACGATACCAGGCAG
CCAAGAAATGAGAGGCCACCTCGCTTTCAAAAAGACACCCCAACTTCCAAGTCAACTGTAGAAAACAGCG
TATTATCTAGAAATAGAGGCTCCGAAAGGCCGAGTAGTTCCTCAGGTTCTGATGTATGGGCAGAAGAGAG
GATCAAGTGTGACAGGCCATATTCTAGGTATGACAGAACTAAAGACGCTTCACATCCTCTAGGCCTTCAG
CACAACGATGGTGCTTTTAAAAAGAGAGAGAACTCTATGCAAAACAGACCAGGAAGAGGCCCTTTGTATG
CAGAGGCCAAAGAAAACCCACTTCCTCCAGAATTCGTAGATTACAATAATCAAAGACGTGGGAGAAGAGA
AAACCAAACAGGTCATCCTGATCACTGTTATGAGAGGAAACCACGGACAATGAATAGTGAAGCTGTTAGT
GGTCTAAAAATTGAGAAACATTTTAGTGTAAACACTGATTACCCGAGGCCTGTGCAGAGCAATAGTCTTG
GTGTTCCAAATGGAGAGACAGCTCCGCCTCTGAAAGGAAGGCGCGTAGGACCGATTAAGTCAGCAGGACC
TGTCACAGCTGTGCCCTACGATGATAAAATATTTTATAATAGTGGGCCCAAAAGAAGGTCTGGGCCAATT
AAGCCTGAAAAGGTGATAGAATCATCTATTCCTGTGGAGTATGCAAAAGTGTGGAAACCTGGCGATGAAT
GTTTTGCACTTTATTGGGAAGACAACAAGTTTTACCGAGCAGAAGTTGAAGCCTTGCATTCTTCGGGTAT
GACAGCGGTCGTTAAGTTCACGGACTACGGCAACTATGAAGAGGTGCTACTGAGCAATATCAAGCCTGTT
CAGACAGAGGCATGGGTACGTGATCCAAATTCTGTACAAAGGCTACTTTGA

Translation (716 aa):
MAEVSGAALSQAGWYLSDEGVEACTSSPGKGSINDIILIALNTDLRTIGKKFLPSDINGGKVEKLEGPCV
LQIQKVRNVAAPKDNEESQAAPRMLRVQMTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFL
LLSDSNTTVLGGEVEHLIDKWALQRSLLKHNRSNIGAEGGPPPFLPFGQKCASNVQVDSRELDRRKTLQV
SLPAKPANDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNIGAAGHRNREVLQKEKASKSESKNE
GVYRELVDEKALKHITEMGFSKEASRQALMDNANNLEAALNVLLNSSKQKPAVGPPARGRGKGRGRGRSE
DEEDLGTARPSAPSTLFDFLESKMGTLNVEEPKSQPQHLHQGQHRGWNAEQNGMKDGTQSRHLPRNDTRQ
PRNERPPRFQKDTPTSKSTVENSVLSRNRGSERPSSSSGSDVWAEERIKCDRPYSRYDRTKDASHPLGLQ
HNDGAFKKRENSMQNRPGRGPLYAEAKENPLPPEFVDYNNQRRGRRENQTGHPDHCYERKPRTMNSEAVS
GLKIEKHFSVNTDYPRPVQSNSLGVPNGETAPPLKGRRVGPIKSAGPVTAVPYDDKIFYNSGPKRRSGPI
KPEKVIESSIPVEYAKVWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV
QTEAWVRDPNSVQRLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH