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Report for CCDS56787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56787.1 Public Mus musculus 11 Camta2 23 108 98 CCDS HistoryNCBI Gene:216874Re-query CCDS DB by CCDS ID:56787.1Re-query CCDS DB by GeneID:216874See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119120.1 ENSMUSP00000113847.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119120.1Link to Ensembl Protein Viewer:ENSMUSP00000113847.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119120Re-query CCDS DB by Protein ID:ENSMUSP00000113847
Original member Current member NCBI NM_001190378.1 NP_001177307.1 Accepted alive Link to Nucleotide Sequence:NM_001190378.1Link to Protein Sequence:NP_001177307.1Re-query CCDS DB by Nucleotide ID:NM_001190378Re-query CCDS DB by Protein ID:NP_001177307Link to BLAST:NP_001177307.1

Chromosomal Locations for CCDS 56787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70670199 70670262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70670346 70670420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70670549 70670736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70671008 70671079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70671450 70671633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70671884 70672080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70673954 70674255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70674612 70674834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70675156 70675234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70675553 70675737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70676400 70676515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70678284 70678418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70679527 70679653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70680825 70681768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70682461 70682595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70682894 70683047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70683279 70683350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70683890 70684025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70684105 70684172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70686063 70686166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70686347 70686377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3591 nt):
ATGAATACCAAGGACACCACTGAGGTTGCTGAGAATAGCCACCACCTGAAGATCTTCCTCCCCAAGAAAT
TGCTGGAGTGTCTTCCTCGATGCCCACTGTTGCCTCCAGAGCGGCTCCGATGGAATACAAATGAGGAGAT
TGCATCCTACCTGATCACCTTTGAGAAACACGATGAGTGGCTGTCTTGTGCCCCAAAGACAAGGCCTCAG
AATGGCTCCATTATCCTCTACAATCGTAAGAAGGTGAAATACCGGAAGGATGGTTACCTTTGGAAGAAAC
GGAAGGATGGGAAGACTACCCGAGAGGACCACATGAAACTCAAGGTCCAGGGCATGGAGTGTCTCTATGG
CTGCTACGTTCACTCTTCCATCGTCCCCACATTCCACCGGCGCTGCTATTGGCTGCTCCAGAACCCCGAC
ATCGTCCTTGTGCACTACCTGAACGTCCCAGCCCTGGAGGATTGTGGAAAGGGCTGTAGCCCCATCTTTT
GTTCCATCAGTAGCGACCGTCGAGAATGGCTGAAGTGGTCACGTGAGGAGCTCTTGGGACAGCTGAAGCC
CATGTTTCATGGCATCAAGTGGAGCTGTGGGAATGGGGCAGAGGAATTCTCCGTGGAACAGTTGGTGCAA
CAGATCTTGGACACCCACCCAACCAAGCCAGCACCCAGAACTCATGCTTGTCTCTGCAGTGGGGGCCTTG
GTTCCGGGAGCCTTACCCACAAATGCAGTAGCACGAAACACCGCATCATCTCTCCCAAAGTGGAGCCCCG
AGCTTTAGCCCTGGCTTCTATATCCCACTCCAAGCCCCCCGAACCCCCACCACTGATAGCTCCACTTCCT
CCAGAGCTCCCCAAGGCACACACCTCCCCATCTTCCTCCTCTTCTTCCTCCTCCTCCTCAGGATTTGCAG
AACCCCTAGAAATCAGGCCTAGCCCTCCTACCTCTCGAGGGGGTTCATCAAGAGGAGGCACTGCTATCCT
CCTCCTAACAGGACTAGAGCAGCGCGCTGGGGGCCTGACACCCACCAGGCACTTGGCTCCGCAGGCTGAG
CCTAGACCTCCTGTGAGCTTGGCCGTGGTTGTAGGTTCTGAGCCTTCTGCCCCACCGGCTCCTCCCAGCC
CTGCCTTTGACCCTGATCGTTTTCTCAACAGCCCCCAAAGGGGCCAGACATACGGAGGGGGCCAAGGAGT
AAACCCAGACTTCCCCGAGGCAGAGGGCACTCACACTCCCTGTCCTGCCCTGGAACCTGCAGCTGCCCTG
GAGCCCCAGGCGGCTGCTCGAGGTCTCGCTCCACAGTTGGGAGCAAACGGGAGAAGAGGAAACAAATTCT
TTATCCAAGATGATGATAGTGGGGAGGAACTCAAGGGTCCGGGAACGGTGCCGCCGGTACCTTCATCCCC
TCCTTCATCCCCGTCCTCCCCAACCGCCTTGCCGCCATCAGGCAGGGCAACGAGAGGAGAAGCCTTGTTC
GGAGGCTCTGCTGGCAGCAGCAGCGAGCTCGAGCCCTTCAGTCTTTCGTCATTCCCAGACCTCATGGGAG
AACTCATCAGTGATGAAGCTCCAGGTGTCCCTGCCCCCGCCCCCCAGCTCTCTCCTGCGCTAAATGCCAT
CACAGACTTCTCCCCAGAGTGGTCCTACCCAGAGGGCGGGGTCAAGGTGCTCATCACAGGCCCTTGGACA
GAGGCCGCAGAGCATTACTCCTGTGTCTTCGATCACATCGCAGTGCCAGCCTCCCTGGTCCAGCCTGGTG
TCTTACGCTGCTACTGTCCTGCCCATGAGGTAGGGCTGGTGTCTTTGCAGGTGGCGGGGCGAGAGGGCCC
CCTCTCTGCCTCTGTGCTCTTTGAGTATCGAGCCCGCCGGTTCCTGTCTCTGCCTAGTACACAGCTCGAC
TGGTTGTCACTGGATGACAGCCAGTTCCGGATGTCCATCCTGGAGCGGCTGGAGCAGATGGAGAAGCGGA
TGGCAGAGATTGCGGCAGCTGGGCAGGCTCCTGGTCAGGGCCCAGAGGCTCCTCCAATTCAGGATGAAGG
CCAGGGCCCTGGCTTCGAGGCACGGGTGGTGGTCTTGGTAGAGAGCATGATCCCGCGGTCCACTTGGAGG
GGTCCTGAACGGCTGATCCATGGAAGTCCCTTCCGGGGCATGAGCCTCCTACATCTGGCTGCTGCACAGG
GCTACGCTCGGCTCATCGAGACTCTGAGCCAGTGGAGGAGTGTGGAAACAGGAAGCTTGGACTTAGAGCA
AGAGGTTGACCCGCTCAATGTGGACCATTTCTCTTGCACCCCTCTGATGTGGGCCTGTGCTCTGGGACAC
TTAGAAGCTGCTGTGCTTCTTTTCTGTTGGAACCGACAAGCACTGAGCATTCCGGACTCTCTGGGCCGAC
TCCCCCTGTCTGTGGCTCATTCTCGTGGTCACGTGCGCCTTGCCCGCTGCCTTGAGGAACTGCAGAGACA
GGAGCTTTCAGTTGAGCACCCACTCGCTCTATCCCCACCATCCTCTAGCCCAGACACTGGCCTGAGCAGC
GCCTCGTCACCCTCCGAGCTGTCAGATGGCACTTTCTCTGTGACATCAGCCTACTCAAGTGCCCCAGATG
GCAGTCCTCCCCCTGCTCCTCCGCTGGCCTCTGACATTTCTATGGAGATGATCCCAGGCCAGCTTTCTTG
TGGTGCCCCTGAGACACCCTTACTCCTCATGGACTATGAAGCCACTAACTCCAAAGAACCTGCTCCCTCC
CCGTGCGGCCCCCCACTAGCCCAGGACAATGGGGCTGCTCCAGAGGATGCTGACAGCCCACCAGCTGTGG
ATGTGATCCCGGTGGACATGATCTCACTGGCCAAGCAGATCATCGACGCCACACCAGAGCGGATTAAACG
AGAGGACTTCTCAGAGTTCCCTGACGCTGGAGCCTCACCACGGGAGCACACAGGCACCGTGGGGCTCAGT
GAGACCATGTCCTGGCTGGCCAGTTACCTGGAGAATGTGGATCATTTCCCCAGCTCAGCTCCTCCCAGTG
AGCTGCCCTTTGAACGAGGTCGCCTCGCTATCCCCCCTGCACCTTCCTGGGCAGAGTTCCTCTCTGCATC
TACCAGTGGCAAGATGGAAAGTGATTTTGCCCTGCTGACTCTCTCAGATCACGAGCAGCGGGAGCTGTAT
GAGGCAGCACGAGTCATCCAGACAGCTTTCCGAAAGTACAAGGGTCGGAGGCTGAAGGAGCAGCAGGAGG
TAGCCGCAGCGGTGATCCAACGTTGTTATCGGAAGTACAAGCAGTTTGCACTCTATAAGAAAATGACTCA
GGCGGCCATCCTGATTCAGAGCAAGTTCCGAAGCTACTATGAACAGAAGCGGTTTCAGCAGAGCCGCCGA
GCAGCGGTGCTTATCCAGCAGCACTACCGCTCCTACCGCCGCAGGCCGGGGCCTCCTCACCGGCCCTCAG
GCCCCCTTCCTGCTCGAAACAAGGGCACCTTTCTCACCAAGAAGCAAGACCAGGCAGCCCGGAAAATAAT
GAGGTTCCTGCGGCGCTGCCGACACAGAATGAGGGAACTGAAGCAGAACCAGGAGCTGGAGGGGCTGCCC
CAGCCAGGACTGGCCACCTGA

Translation (1196 aa):
MNTKDTTEVAENSHHLKIFLPKKLLECLPRCPLLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQ
NGSIILYNRKKVKYRKDGYLWKKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNPD
IVLVHYLNVPALEDCGKGCSPIFCSISSDRREWLKWSREELLGQLKPMFHGIKWSCGNGAEEFSVEQLVQ
QILDTHPTKPAPRTHACLCSGGLGSGSLTHKCSSTKHRIISPKVEPRALALASISHSKPPEPPPLIAPLP
PELPKAHTSPSSSSSSSSSSGFAEPLEIRPSPPTSRGGSSRGGTAILLLTGLEQRAGGLTPTRHLAPQAE
PRPPVSLAVVVGSEPSAPPAPPSPAFDPDRFLNSPQRGQTYGGGQGVNPDFPEAEGTHTPCPALEPAAAL
EPQAAARGLAPQLGANGRRGNKFFIQDDDSGEELKGPGTVPPVPSSPPSSPSSPTALPPSGRATRGEALF
GGSAGSSSELEPFSLSSFPDLMGELISDEAPGVPAPAPQLSPALNAITDFSPEWSYPEGGVKVLITGPWT
EAAEHYSCVFDHIAVPASLVQPGVLRCYCPAHEVGLVSLQVAGREGPLSASVLFEYRARRFLSLPSTQLD
WLSLDDSQFRMSILERLEQMEKRMAEIAAAGQAPGQGPEAPPIQDEGQGPGFEARVVVLVESMIPRSTWR
GPERLIHGSPFRGMSLLHLAAAQGYARLIETLSQWRSVETGSLDLEQEVDPLNVDHFSCTPLMWACALGH
LEAAVLLFCWNRQALSIPDSLGRLPLSVAHSRGHVRLARCLEELQRQELSVEHPLALSPPSSSPDTGLSS
ASSPSELSDGTFSVTSAYSSAPDGSPPPAPPLASDISMEMIPGQLSCGAPETPLLLMDYEATNSKEPAPS
PCGPPLAQDNGAAPEDADSPPAVDVIPVDMISLAKQIIDATPERIKREDFSEFPDAGASPREHTGTVGLS
ETMSWLASYLENVDHFPSSAPPSELPFERGRLAIPPAPSWAEFLSASTSGKMESDFALLTLSDHEQRELY
EAARVIQTAFRKYKGRRLKEQQEVAAAVIQRCYRKYKQFALYKKMTQAAILIQSKFRSYYEQKRFQQSRR
AAVLIQQHYRSYRRRPGPPHRPSGPLPARNKGTFLTKKQDQAARKIMRFLRRCRHRMRELKQNQELEGLP
QPGLAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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