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Report for CCDS56771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56771.1 Public Mus musculus 11 Larp1 23 108 98 CCDS HistoryNCBI Gene:73158Re-query CCDS DB by CCDS ID:56771.1Re-query CCDS DB by GeneID:73158See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178636.1 ENSMUSP00000136673.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178636.1Link to Ensembl Protein Viewer:ENSMUSP00000136673.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178636Re-query CCDS DB by Protein ID:ENSMUSP00000136673
Original member Current member NCBI NM_028451.1 NP_082727.1 Accepted alive Link to Nucleotide Sequence:NM_028451.1Link to Protein Sequence:NP_082727.1Re-query CCDS DB by Nucleotide ID:NM_028451Re-query CCDS DB by Protein ID:NP_082727Link to BLAST:NP_082727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082727.1 1072 Q6ZQ58-1 1072 100% 0 0

Chromosomal Locations for CCDS 56771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58009193 58009547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58040391 58040452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58040690 58040755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58041478 58041652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58042230 58042358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58042436 58042642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58042744 58042906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58043906 58044050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58047695 58047869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58047977 58048146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58049697 58050089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58050783 58050906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58051002 58051207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58051625 58051731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58052580 58052731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58055467 58055611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58057054 58057163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58057261 58057388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58058559 58058765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3219 nt):
ATGGCCACTCAAGTGGAGCCGCTGCTGCCGGCGGGCGCCCCGCTGCTGCAGGCCGAGGAGCACGGCCTGG
CGAGGAAGAAGCCGGCGCCCGACGCCCAGGCCGAGTCGGGCCCGGGTGACGGCGGCGGAGAGCCCGACGG
CGGCGTCCGCAGGCCGCGGCCCGCCTGCGCCAGGCCTGGCCGCGACGGCGCGGAGCGCGAGAGCCCGCGG
CCACCCGCAGCTGCGGAAGCCCCAGCGGGGAGCGACGGCGAGGACGGCGGCCGGCGTGACTTCGTGGAGG
CACCGCCGCCCAAGGTGAACCCGTGGACGAAGCACGCGCCGCCGCCGGCCGCGGTGAACGGACAGCCGCC
TCCAGAACCTTCTGCTCCAGCCAAGGTGGTGAGGGCAGCTGCTCCTAAACCGCGTAAGGGCAGCAAGGTT
GGTGATTTTGGAGATGCAGTCAACTGGCCTACACCTGGAGAGATAGCCCACAAAAGTGTGCAGCCACAGT
CCCACAAGCCTCAGCCTGCTCGTAAGTTGCCACCTAAGAAGGACATGAAGGAGCAAGAGAAAGGAGATGG
AAGTGATAGTAAGGAGAGCCCAAAAACAAAGTCGGATGAATCGGGGGAGGAAAAGAATGGGGATGAGGAC
TGCCAGCGAGGCGGGCAGAAGAAGAAAGGGAGCAAACACAAGTGGGTTCCATTGCAAATAGACATGAAGC
CCGAAGTACCCAGAGAGAAATTGGCCTCCCGTCCCACTCGCCCACAGGAACCAAGACATACACCCGCTGT
CCGTGGGGAGATGAAAGGATCTGAACCTGCCACCTACATGCCTGTATCTGTGGCCCCACCCACCCCAGCC
TGGCAACCAGAGACCAAAGTGGAGCCTGCCTGGCACGACCAGGATGAGACATCGAGTGTGAAGAGTGATG
GGGCTGGTGGGGCTCGGGCTTCCTTCCGTGGCCGTGGACGGGGGCGTGGTCGTGGACGGGGCCGTGGACG
GGGTGGCACTCGAACCCACTTTGACTACCAGTTTGGCTACCGAAAGTTTGATGGTACAGAGGGGCCCCGC
ACCCACAAGTATATGAACAACATCACTTACTACTTTGACAATGTCAGCAGCAATGAGATTTACAGTATGG
ACCAGGAGCTGCTCAAGGATTATATCAAACGCCAGATTGAATATTACTTCAGCGTGGACAATTTAGAGCG
AGACTTCTTCCTGAGACGGAAAATGGATGCTGATGGCTTCCTTCCCATCACCCTTATTGCTTCCTTTCAC
CGTGTACAGGCCCTAACCACTGACATTTCACTCATCTTTGCGGCTCTAAAGGACAGCAAGGTGGTAGAGA
TGGTTGAGGAGAAAGTCCGCAGGAGGGAAGAACCTGAAAAGTGGCCACTGCCTGGACCCCCAATAGTGGA
TTATTCACAAACTGATTTTTCTCAGCTTCTCAACTGCCCAGAGTTTGTTCCCCGCCAGCACTACCAGAAA
GAGACAGAGTCGGCACCTGGCTCTCCCCGTGCAGTCACCCCAGTGCCAACAAAAACAGAGGAGGTCAGCA
ACCTGAAGACCCTTCCCAAGGGCCTGTCTGCCAGCCTCCCAGATCTGGATTCTGAGAGCTGGATTGAAGT
GAAGAAAAGGCCTCGACCCTCACCAGCACGCCCCAAGAAGCCAGAGGAGCCCAGGTTCTCCCACCCAACT
GCTCTGCCTCAGCAGCTTCCCTCCCAGCAGCTGATGTCTAAGGATCAGGATGAGCAAGAAGAACTAGACT
TTCTGTTTGACGAGGAGATGGAGCAGATGGATGGGCGGAAGAATACCTTCACTGCCTGGTCTGAAGAGGA
CTCTGACTATGAAATTGATGACCGGGATGTCAATAAGATCCTCATCGTCACTCAAACACCACCTTACATG
CGTCGCCACCCTGGAGGAGACCGTACAGGCAACCACACTTCGCGTGCCAAGATGAGTGCTGAACTGGCCA
AGGTCATTAATGATGGACTCTTCTACTATGAACAAGACCTGTGGACTGAGAAGTTTGAGCCTGAGTATTC
ACAGATCAAGCAAGAAGTGGAAAACTTCAAGAAAGTGAATATGATTAGTCGGGAACAGTTTGACACTCTG
ACCCCTGAGCCCCCTGTGGATCCTAACCAGGAGGTTCCTCCTGGGCCACCTCGGTTCCAACAAGTTCCTA
CTGATGCCCTGGCCAACAAGCTGTTTGGTGCTCCCGAGCCATCTACCATTGCCCGTTCTCTACCAACCAC
TGTCCCAGAGTCTCCAAACTACCGAAATGCCAGGACTCCCCGCACACCCCGGACCCCCCAGCTCAAAGAC
TCTAGTCAGACACCACGGTTTTACCCTGTGGTGAAAGAAGGACGGACCCTAGATGCCAAGATGCCTCGAA
AAAGAAAGACAAGGCACAGCTCGAACCCCCCCTTGGAAAGTCATGTGGGCTGGGTGATGGATTCTCGGGA
GCACAGGCCCAGGACTGCTTCTATTAGCTCCAGTCCTTCAGAGGGAACACCTGCAGTCGGCAGCTATGGC
TGTACCCCTCAGTCACTGCCCAAGTTCCAGCATCCTTCCCATGAGCTGCTCAAGGAAAATGGCTTCACAC
AACACGTCTACCACAAGTATCGGAGGCGCTGCCTTAATGAGCGGAAGCGCTTGGGCATTGGCCAGTCTCA
GGAGATGAACACCCTCTTCCGCTTTTGGTCCTTCTTCCTCCGAGATCACTTCAATAAAAAGATGTATGAA
GAGTTCAAGCAGCTCGCACTGGAGGATGCCAAAGAAGGCTACAGGTACGGTTTGGAGTGCCTTTTTCGAT
ACTACAGTTATGGTCTAGAGAAAAAGTTCCGGCTGGACATATTCAAGGATTTCCAGGAGGAGACAGTGAA
GGACTATGAGGCTGGCCAGCTCTATGGATTGGAGAAGTTCTGGGCCTTCTTGAAATACTCCAAAGCCAAA
AATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCGCCGCTTAGAAGACTTCCGAGTGG
ACCCCCCCATGGGCGAGGAAGGCAACCACAAGCGACACCCAGTGGTAGCAGGAGGCAGCGGAGAGGGCAG
GAAGCGGTGCCCTTCCCAGTCTTCCAGCAGGCCTGCCACTGGGATCAGCCAACCCCCTACGACACCTACT
GGCCAGGCCACTCGAGAAGATGCCAAATGGACAAGCCAGCACTCGGACACACTGACTTTGCGAAAGTGA

Translation (1072 aa):
MATQVEPLLPAGAPLLQAEEHGLARKKPAPDAQAESGPGDGGGEPDGGVRRPRPACARPGRDGAERESPR
PPAAAEAPAGSDGEDGGRRDFVEAPPPKVNPWTKHAPPPAAVNGQPPPEPSAPAKVVRAAAPKPRKGSKV
GDFGDAVNWPTPGEIAHKSVQPQSHKPQPARKLPPKKDMKEQEKGDGSDSKESPKTKSDESGEEKNGDED
CQRGGQKKKGSKHKWVPLQIDMKPEVPREKLASRPTRPQEPRHTPAVRGEMKGSEPATYMPVSVAPPTPA
WQPETKVEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGTEGPR
THKYMNNITYYFDNVSSNEIYSMDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFH
RVQALTTDISLIFAALKDSKVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQK
ETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSESWIEVKKRPRPSPARPKKPEEPRFSHPT
ALPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSEEDSDYEIDDRDVNKILIVTQTPPYM
RRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTL
TPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKD
SSQTPRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYG
CTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYE
EFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAK
NLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHPVVAGGSGEGRKRCPSQSSSRPATGISQPPTTPT
GQATREDAKWTSQHSDTLTLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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