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Report for CCDS53146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53146.1 Public Mus musculus X Otud6a 23 108 98 CCDS HistoryNCBI Gene:408193Re-query CCDS DB by CCDS ID:53146.1Re-query CCDS DB by GeneID:408193See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060241.2 ENSMUSP00000059861.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060241.2Link to Ensembl Protein Viewer:ENSMUSP00000059861.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060241Re-query CCDS DB by Protein ID:ENSMUSP00000059861
Original member NCBI NM_001163191.2 NP_001156663.1 Updated not alive Link to Nucleotide Sequence:NM_001163191.2Link to Protein Sequence:NP_001156663.1Re-query CCDS DB by Nucleotide ID:NM_001163191Re-query CCDS DB by Protein ID:NP_001156663
Current member NCBI NM_001163191.3 NP_001156663.1 Accepted alive Link to Nucleotide Sequence:NM_001163191.3Link to Protein Sequence:NP_001156663.1Re-query CCDS DB by Nucleotide ID:NM_001163191Re-query CCDS DB by Protein ID:NP_001156663Link to BLAST:NP_001156663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156663.1 290 Q6IE21 290 100% 0 0

Chromosomal Locations for CCDS 53146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100429013 100429885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTCTGACACCGAGCAGGAACTCCAACGGGTGATCCGTCGCCACTATCGCGAAAAAAGGGAGCTACAAG
CACACATCCAGACTTTGAAAGCTTCCGTCCCAAAGAACGACAAGGGCAGACGGAAGCAGATGCTCGCGGA
CATCTCCCGCCTCGAGGCCGAGATGGAGCAGAGGCACAAGCAGGAGCTGGAGAAATTTGGAGAAAATCCT
GACAGCAGTGTGGATTCGGTTACAGCCGACCTCGAAAAGATGAATCTCGAGAATATGCCTCCACGCCCAC
CCAAGGCCCAGAAACGGCGCGACCGAAGAGCTCACCAGGAGAGACGGCACCAGGAGAGGATGCCTGCGGC
CCAGGCCGAACAACTGGCTGCCAACCGTCGTGAGGAGGAGGAAAAGGTCGCTGCCATTCTAGGGGCTAAA
AATTTGGAGATGAAGACCATCCCAGCTGACGGCCACTGCATGTATCGTGCCATCCAGGATCAGCTGGTGT
TCTCCGTGACAATCGAGAGCCTTCGCTACCGCACTGCCTACTACATGCGGAAACATATTGATGACTTCTT
ACCTTTCTTCACCGAGCCCGAGGCCGGCAACTTCTACACCCGAGAGGACTTCCTGAGGTACTGTGATGAC
ATTGTGCACAATGCTTCGTGGGGAGGTCAGCTGGAGCTGAGAGCCCTGTCGCATGTCCTGCAGACCCCCA
TCGAGGTGGTACAGGCCAACTCACCCACCATTGTCATCGGGGAGGAGTACACCAGGAAGCCGGTCACGCT
GGTCTATCTGCACTACGCCTGCGACTTCGGAGAGCACTACAATTCGGTGAAGCCCATTGAGGTTGCTGGA
GCATTTGGAGGAATGGCACCGCGCCTCTTCTAG

Translation (290 aa):
MSDTEQELQRVIRRHYREKRELQAHIQTLKASVPKNDKGRRKQMLADISRLEAEMEQRHKQELEKFGENP
DSSVDSVTADLEKMNLENMPPRPPKAQKRRDRRAHQERRHQERMPAAQAEQLAANRREEEEKVAAILGAK
NLEMKTIPADGHCMYRAIQDQLVFSVTIESLRYRTAYYMRKHIDDFLPFFTEPEAGNFYTREDFLRYCDD
IVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKPVTLVYLHYACDFGEHYNSVKPIEVAG
AFGGMAPRLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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