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Report for CCDS53123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53123.1 Public Mus musculus X Srsf8 23 108 98 CCDS HistoryNCBI Gene:245492Re-query CCDS DB by CCDS ID:53123.1Re-query CCDS DB by GeneID:245492See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080083.2 ENSMUSP00000078984.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080083.2Link to Ensembl Protein Viewer:ENSMUSP00000078984.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080083Re-query CCDS DB by Protein ID:ENSMUSP00000078984
Original member Current member NCBI NM_173435.3 NP_775611.2 Accepted alive Link to Nucleotide Sequence:NM_173435.3Link to Protein Sequence:NP_775611.2Re-query CCDS DB by Nucleotide ID:NM_173435Re-query CCDS DB by Protein ID:NP_775611Link to BLAST:NP_775611.2

Chromosomal Locations for CCDS 53123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 81419610 81421102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81422574 81422750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81425890 81426084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81457378 81458002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGTGTTGCTCTCATGCTCTTCTCAATGTAGATGGAATGACCTGCCTCAAGGTTGAAAACTTGGCACACC
ACACTTCATCTTATACTTTGAAGCACGTCTTTGAGGATTATGGACCTCTTGGTGATGTATACATACCCCG
AAATCACTTAACTGAAGAGCACTATGGCTTTGCCTTCATCCATTTCTACAACAAATGTGATGCCAATGAT
GCCTTACATTCCCTAAATGGATTTTTACTGGATGGTTGTAAACTGAAGGTACAGATGGTGTACAATGATG
ATCCACATTATGCTCAACCCGATTGTAGCTCGGGAAGGCAATACCAGTACAAGGAAGAAAACCATGACCT
TCAGAGCGAATGCGAAAGACAGCATTTTTCCAACACCAGAATCCAAACCAGATCTCACAGCAGATCTTCT
GGAGACGACTCAGAATTCAAATCTCAATCTTCTAATCACTTGCATAGAAGATCATCATCAACCAGATTCA
AGACCCAGTCTTCAGTGTCTACTCAACAACTGCCAAACAGGGCCTGTCCAAAGTCCAAAAACCTTCCAGG
AAAAAAGAAGAAACCCAAACCTAAATCTTCATATAAGAGTGCCTCCAAGTATCCTTCAGGAGGAGGACTT
CTTGTGGGAGAAAAACTGGAGAACAACCAGAGGCAAGTGGAAAATGGACAATCCAATTCTATGTTTGAAA
AACCATGTAGAACAAAAGTAAATGCAACTCACACATTGATAACACGTCCATCTACCAGAAGTCAGACAAG
AAAAAGATTAAGAAGCCCACAAAATTCAAGTGAAAATTCAAAGTTGGAAAGAAAATATGCAGAAAATAAA
GAAAGGCAAATGGAATATCCACAGTCTCCATCAATAATTAAAAAAACATATTTATCAAAAGAAATTGAAC
CTGAAATATTGACAGTATATGATAGAACTCAGAGAAGAACAAGAAGGAGGAGCCAAGGACTTCCAAGATC
CAACAACTCGAATAGATGTGGAGCAAATACTGCAGATGTTTTGCATAGTGTTGACTCTGAAAGCGGCCAA
CTTAACTCCCTACAACAATCTGAAAAGAGAACAAAAATGGGGATAGAGGAGTGTGGGTTTTGGACAGCAA
ACTGTCAGGGTAACTCAAGCAATGATATCACTGGTAGGATGAGATTTACCTGTAATAAAGGGAACACAAT
TCCACAAAATGGCCTTTCAGGGCTTAGCTGTCATGACAGTAACAGGAAAATCCATAAGCAATTAGACTAT
CAAGAACTTGAGTCAATGCATGTAACTCCATTTACACAAGAAGGAAATATAACTGAAGTTTTAATGGAAG
ACACATGTAGTAAAGAAACAAGTACTAGACGAAAGACTCCAGACATTCTGACACTTAAAGAAACAATTGA
AAGTAGGTTACATCCAGATACCAAGGATGTGGCACTGGGGGGACCTCATTATTGTTTATCACTTGAAACT
TTTGAAGATCTTAGGAAGGATAAGGCTTACATTTTTTCTAATAGTCACACATTTTTACCATTGAGAGACA
ATTTAGCCATATCTGAGTTGCAAAAACTATATTTCTTTCCATCATTTCCAACAATAGAACACATATTGAC
AGAGAGCACTGCTCATAGAAGTCAGTCTACATCTGTAACACCAACTAAGTTTACCACTGTGGAAATTGAT
CAAAAAGAACACACAAAGACCTCTTCATGTTCTAACCAGACAGATATACAAATTTCTGACGTAATTTCTG
ATGATGAAACTTTAAATACTAATTTAGAATGTACAATACCTTCAGCTCCTTGTGAAACATCAGGGAACAT
CATGCTAGGAGTTTTTGAGGTAGATGATAATTTCACTGAGTTTGACTTACAATCTTGTGACTCATTGTCA
AGTCAAAATAATAGAAGAGTTCATTCTGGCCACAGTAGAATTTCTAGATCTGTTTCCAGCTTAAATTCAA
ATTCTACCACTAGTTCTAGTACAAATCACTCACTTCTTTCTTTATTAAATTACAGTCAACAGTTTTTACC
TGTTTCTAGTACGAGTGACAATATTATTGGCAATGACATAAATTTGCCACATACCTCACAAATTAATCAA
GAAAGCAATGAATTCATTGTATTTAATTGCCCACCTTTTGAGGCCAGGCAACAAATGCATGTTACAAGCC
CAGAAACATCTAATGATAGTGATTATTGGCCAGTTTTGCCTGATTTTTCAAACTTCAATGATATTCATAA
TAACCACCCTAAAGGACTTACCGAAGAACAGATTAATAATTTACCAGTAATTTATTTTTGTGAAAATGAT
GAAATAAGCCACTGCAGTATTTGTCTTACACAATACATAAAAAACAGTAAGATCCGTGTACTACCTTGCT
TTCATGAATATCATGATAAATGTATTGATCGCTGGCTGTCTGACAACTCTACCTGTCCTATTTGTCGCAA
ACATATAATAAATTCTGATGACACAGAATTTCTATTTTGA

Translation (829 aa):
MCCSHALLNVDGMTCLKVENLAHHTSSYTLKHVFEDYGPLGDVYIPRNHLTEEHYGFAFIHFYNKCDAND
ALHSLNGFLLDGCKLKVQMVYNDDPHYAQPDCSSGRQYQYKEENHDLQSECERQHFSNTRIQTRSHSRSS
GDDSEFKSQSSNHLHRRSSSTRFKTQSSVSTQQLPNRACPKSKNLPGKKKKPKPKSSYKSASKYPSGGGL
LVGEKLENNQRQVENGQSNSMFEKPCRTKVNATHTLITRPSTRSQTRKRLRSPQNSSENSKLERKYAENK
ERQMEYPQSPSIIKKTYLSKEIEPEILTVYDRTQRRTRRRSQGLPRSNNSNRCGANTADVLHSVDSESGQ
LNSLQQSEKRTKMGIEECGFWTANCQGNSSNDITGRMRFTCNKGNTIPQNGLSGLSCHDSNRKIHKQLDY
QELESMHVTPFTQEGNITEVLMEDTCSKETSTRRKTPDILTLKETIESRLHPDTKDVALGGPHYCLSLET
FEDLRKDKAYIFSNSHTFLPLRDNLAISELQKLYFFPSFPTIEHILTESTAHRSQSTSVTPTKFTTVEID
QKEHTKTSSCSNQTDIQISDVISDDETLNTNLECTIPSAPCETSGNIMLGVFEVDDNFTEFDLQSCDSLS
SQNNRRVHSGHSRISRSVSSLNSNSTTSSSTNHSLLSLLNYSQQFLPVSSTSDNIIGNDINLPHTSQINQ
ESNEFIVFNCPPFEARQQMHVTSPETSNDSDYWPVLPDFSNFNDIHNNHPKGLTEEQINNLPVIYFCEND
EISHCSICLTQYIKNSKIRVLPCFHEYHDKCIDRWLSDNSTCPICRKHIINSDDTEFLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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