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Report for CCDS53090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53090.1 Public Mus musculus X Mtm1 23 108 98 CCDS HistoryNCBI Gene:17772Re-query CCDS DB by CCDS ID:53090.1Re-query CCDS DB by GeneID:17772See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53090.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025391.10 ENSMUSP00000025391.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025391.10Link to Ensembl Protein Viewer:ENSMUSP00000025391.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025391Re-query CCDS DB by Protein ID:ENSMUSP00000025391
Original member NCBI NM_001164192.1 NP_001157664.1 Updated not alive Link to Nucleotide Sequence:NM_001164192.1Link to Protein Sequence:NP_001157664.1Re-query CCDS DB by Nucleotide ID:NM_001164192Re-query CCDS DB by Protein ID:NP_001157664
Current member NCBI NM_001164192.2 NP_001157664.1 Accepted alive Link to Nucleotide Sequence:NM_001164192.2Link to Protein Sequence:NP_001157664.1Re-query CCDS DB by Nucleotide ID:NM_001164192Re-query CCDS DB by Protein ID:NP_001157664Link to BLAST:NP_001157664.1

Chromosomal Locations for CCDS 53090.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71231399 71231461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71233072 71233144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71234852 71234946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71254251 71254361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71259725 71259826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71284601 71284684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71287152 71287301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71291749 71291937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71296164 71296349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71299568 71299774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71302501 71302614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71307700 71307876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71313646 71313813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGCTTCTGCATCAGCATCTAAGTATAATTCACACTCCTTGGAGAATGAATCCATTAAGAAAGTGTCTC
AAGATGGAGTCAGTCAGGATGTGAGTGAGACTGTCCCTCGGCTCCCAGGGGAGTTACTAATTACTGAAAA
AGAAGTTATTTACATATGTCCTTTCAATGGCCCCATTAAGGGAAGAGTTTACATCACAAATTATCGTCTT
TATTTAAGAAGTTTGGAAACGGATTCTGCTCTAATACTTGATGTTCCTCTGGGTGTGATATCAAGAATTG
AAAAAATGGGAGGCGCGACAAGTAGAGGAGAAAATTCCTATGGTCTAGATATTACTTGTAAAGATTTGAG
AAACCTGAGGTTTGCATTGAAGCAAGAAGGCCACAGCAGAAGAGATATGTTTGAGATCCTTGTAAAACAT
GCCTTTCCTCTGGCACACAATCTGCCATTATTTGCATTTGTAAATGAAGAGAAGTTTAACGTGGATGGGT
GGACTGTTTATAATCCAGTTGAAGAATATAGAAGGCAGGGCCTGCCCAATCACCATTGGAGGATAAGTTT
TATTAACAAGTGCTATGAGCTCTGTGAGACATACCCTGCTCTTTTGGTGGTTCCCTATCGGACCTCAGAT
GATGATCTTAGGAGGATCGCAACGTTTAGATCCCGAAATCGGCTTCCTGTACTGTCGTGGATTCACCCAG
AAAACAAAATGGTCATTATGCGCTGCAGTCAGCCTCTTGTCGGTATGAGTGGTAAAAGAAATAAAGATGA
CGAGAAATACCTGGATGTGATCAGGGAAACTAACAAACAAACTTCTAAGCTCATGATTTATGATGCACGA
CCCAGTGTAAATGCAGTCGCCAACAAGGCAACAGGAGGAGGATATGAAAGTGATGACGCATATCAAAACT
CAGAACTTTCCTTCTTAGACATTCATAATATTCATGTTATGCGAGAATCTTTAAAAAAAGTGAAAGATAT
TGTTTATCCCAACATAGAAGAATCTCATTGGTTGTCCAGTTTGGAGTCTACTCATTGGTTAGAACATATC
AAGCTTGTTCTGACCGGTGCCATTCAAGTGGCAGACCAAGTGTCTTCAGGAAAGAGCTCGGTACTTGTGC
ACTGCAGTGACGGATGGGACAGGACCGCTCAGCTGACATCCTTGGCCATGCTGATGTTGGACAGCTTCTA
CAGAACTATTGAAGGCTTTGAGATATTGGTACAGAAAGAGTGGATAAGTTTTGGCCATAAATTTGCATCT
TTCCCCACAGCTTTTGAGTTCAATGAAGGCTTTTTGATTACCGTTTTGGATCATCTGTATAGCTGTCGAT
TTGGTACTTTCTTATTCAACTGTGACTCGGCTCGAGAAAGACAGAAACTTACAGAAAGAACAGTTTCTCT
ATGGTCGCTAATTAACAGCAATAAAGACAAATTCAAAAACCCCTTCTATACAAAAGAAATCAATCGGGTT
TTGTATCCAGTTGCCAGCATGCGTCACTTGGAACTGTGGGTGAATTATTACATCCGATGGAATCCCAGGG
TCAAGCAGCAACAGCCCAACCCAGTGGAGCAGCGTTACATGGAGCTTTTGGCCTTGCGTGACGATTATAT
AAAGAGGCTCGAGGAATTGCAGCTGGCCAACTCCGCCAAGCTTGCTGATGCCCCCGCTTCGACTTCCAGT
TCGTCACAGATGGTGCCCCATGTGCAGACGCACTTCTGA

Translation (572 aa):
MASASASKYNSHSLENESIKKVSQDGVSQDVSETVPRLPGELLITEKEVIYICPFNGPIKGRVYITNYRL
YLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYGLDITCKDLRNLRFALKQEGHSRRDMFEILVKH
AFPLAHNLPLFAFVNEEKFNVDGWTVYNPVEEYRRQGLPNHHWRISFINKCYELCETYPALLVVPYRTSD
DDLRRIATFRSRNRLPVLSWIHPENKMVIMRCSQPLVGMSGKRNKDDEKYLDVIRETNKQTSKLMIYDAR
PSVNAVANKATGGGYESDDAYQNSELSFLDIHNIHVMRESLKKVKDIVYPNIEESHWLSSLESTHWLEHI
KLVLTGAIQVADQVSSGKSSVLVHCSDGWDRTAQLTSLAMLMLDSFYRTIEGFEILVQKEWISFGHKFAS
FPTAFEFNEGFLITVLDHLYSCRFGTFLFNCDSARERQKLTERTVSLWSLINSNKDKFKNPFYTKEINRV
LYPVASMRHLELWVNYYIRWNPRVKQQQPNPVEQRYMELLALRDDYIKRLEELQLANSAKLADAPASTSS
SSQMVPHVQTHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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