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Report for CCDS53051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53051.1 Public Mus musculus X Septin6 23 108 98 CCDS HistoryNCBI Gene:56526Re-query CCDS DB by CCDS ID:53051.1Re-query CCDS DB by GeneID:56526See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115239.9 ENSMUSP00000110894.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115239.9Link to Ensembl Protein Viewer:ENSMUSP00000110894.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115239Re-query CCDS DB by Protein ID:ENSMUSP00000110894
Original member Current member NCBI NM_001177324.1 NP_001170795.1 Accepted alive Link to Nucleotide Sequence:NM_001177324.1Link to Protein Sequence:NP_001170795.1Re-query CCDS DB by Nucleotide ID:NM_001177324Re-query CCDS DB by Protein ID:NP_001170795Link to BLAST:NP_001170795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170795.1 434 Q9R1T4-1 434 100% 0 0

Chromosomal Locations for CCDS 53051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 36915323 36915347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36922840 36923030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36926782 36926914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36930099 36930267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36934384 36934480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36942055 36942216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36946568 36946754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36966596 36966791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36975063 36975177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36989379 36989408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGCAGCGGCCGATATAGCTCGCCAGGTGGGCGAAGATTGTCGAACTGTCCCCCTGGCTGGACATGTGG
GG
TTCGACAGCTTGCCTGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTG
C
GTGGGGGAGACAGGTTTGGGCAAGTCCACGCTCATGGATACCCTGTTTAACACCAAGTTTGAAGGGGAG
CCA
GCGACCCACACACAGCCAGGGGTTCAGCTCCAGTCCAATACCTACGACCTCCAGGAGAGCAACGTGG
GG
TTGAAACTCACAATTGTGAGCACTGTAGGCTTTGGGGATCAGATCAACAAGGAGGACAGCTACAAGCC
C
ATCGTGGAATTCATTGATGCTCAGTTTGAGGCCTACCTACAAGAGGAGCTGAAGATCCGAAGAGTACTG
CAC
TCCTACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCGACAGGACATTCGCTTAAGT
CT
CTGGACCTAGTGACCATGAAGAAGCTGGATAGTAAGGTGAACATCATTCCCGTTATTGCCAAGTCAGA
T
GCCATTTCTAAGAGTGAGCTGGCAAAGTTCAAGATCAAAATCACCAGCGAACTTGTGAGCAATGGAGTC
CAG
ATCTATCAGTTCCCCACAGACGATGAGTCGGTGAGCGAGATCAATGGAACCATGAATGCCCACCTGC
CG
TTTGCTGTTGTTGGCAGCACAGAAGAAGTGAAGATAGGCAACAAGATGATGCGGGCTCGGCAGTATCC
T
TGGGGGACTGTGCAGGTTGAAAACGAGGCTCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGG
GTC
AACATGGAGGATCTGCGGGAGCAGACCCACGCCCGGCACTATGAATTGTACCGCCGCTGTAAGCTGG
AG
GAGATGGGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTGCAGGAGACATATGAGGCAAA
G
AGAAATGAGTTCCTTGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGGCAGATGTTTGTCCAGAGAGTC
AAA
GAGAAAGAAGCGGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAAATTTGACCGTCTGAAGAAAC
TG
CACCAGGAAGAGAAGAAGAAGCTGGAGGATAAGAAGAAATGTCTGGATGAGGAAATGAACGCCTTCAA
G
CAGAGAAAGGCGGCAGCTGAGCTGCTCCAGTCTCAGGGCTCTCAGGCTGGGGGCTCACAGACTCTGAAA
AGG
GACAAAGAGAAGAAGAATAACCCATGGCTGTGTATTGAATAG


Translation (434 aa):
MAAADIARQVGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE
P
ATHTQPGVQLQSNTYDLQESNVGLKLTIVSTVGFGDQINKED
SYKPIVEFIDAQFEAYLQEELKIRRVL
H
SYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSK
VNIIPVIAKSDAISKSELAKFKIKITSELVSNGV
Q
IYQFPTDDESVSEINGTMN
AHLPFAVVGSTEEVKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIR
V
NMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPF
SLQETYEAKRNEFLGELQKKEEEMRQMFVQRV
K
EKEAELKEAEKE
LHEKFDRLKKLHQEEKKKLEDKKKCLDEEMNAFKQRKAAAELLQSQGSQAGGSQTLK
R
DKEKK
NNPWLCIE



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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