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Report for CCDS52669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52669.1 Public Mus musculus 8 Il34 23 108 98 CCDS HistoryNCBI Gene:76527Re-query CCDS DB by CCDS ID:52669.1Re-query CCDS DB by GeneID:76527See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52669.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076846.10 ENSMUSP00000076120.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076846.10Link to Ensembl Protein Viewer:ENSMUSP00000076120.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076846Re-query CCDS DB by Protein ID:ENSMUSP00000076120
Original member Current member NCBI NM_001135100.2 NP_001128572.1 Accepted alive Link to Nucleotide Sequence:NM_001135100.2Link to Protein Sequence:NP_001128572.1Re-query CCDS DB by Nucleotide ID:NM_001135100Re-query CCDS DB by Protein ID:NP_001128572Link to BLAST:NP_001128572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128572.1 235 Q8R1R4-1 235 100% 0 0

Chromosomal Locations for CCDS 52669.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 110742279 110742448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110742644 110742779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110748243 110748404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110748663 110748740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110749425 110749558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110755231 110755258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCCCTGGGGACTCGCCTGGCTATACTGTCTTGGGATCCTACTTGACGTGGCTTTGGGAAACGAGAATT
TGGAGATATGGACTCTGACCCAAGATAAGGAGTGTGACCTTACAGGCTACCTTCGGGGCAAGCTGCAGTA
CAAGAACCGGCTTCAGTACATGAAACATTACTTCCCCATCAACTACAGGATTGCTGTGCCTTATGAGGGG
GTACTCAGAGTGGCCAACATCACAAGGCTGCAGAAGGCTCACGTGAGTGAGCGAGAGCTTCGGTACCTGT
GGGTCTTGGTGAGTCTCAATGCCACTGAGTCTGTGATGGATGTACTTCTCGAGGGCCACCCGTCCTGGAA
GTATCTACAGGAGGTTCAGACATTGCTGGAGAACGTACAGCGGAGCCTCATGGATGTGGAGATTGGCCCT
CACGTGGAAGCTGTGTTATCTCTTCTGAGTACTCCAGGCCTAAGCCTGAAGCTGGTGCGGCCCAAAGCCT
TGCTGGACAACTGCTTCCGGGTCATGGAACTGCTGTACTGTTCTTGCTGTAAACAAAGCCCCATCTTAAA
ATGGCAGGACTGCGAGCTGCCCAGGCTCCATCCCCACAGTCCGGGGTCCTTGATGCAATGTACAGCTACA
AATGTGTACCCTTTGTCTCGGCAGACCCCCACCTCCCTGCCCGGATCCCCAAGCTCAAGCCATGGCTCGT
TGCCCTGA

Translation (235 aa):
MPWGLAWLYCLGILLDVALGNENLEIWTLTQDKECDLTGYLRGKLQYKNRLQYMKHYFPINYRIAVPYEG
VLRVANITRLQKAHVSERELRYLWVLVSLNATESVMDVLLEGHPSWKYLQEVQTLLENVQRSLMDVEIGP
HVEAVLSLLSTPGLSLKLVRPKALLDNCFRVMELLYCSCCKQSPILKWQDCELPRLHPHSPGSLMQCTAT
NVYPLSRQTPTSLPGSPSSSHGSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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