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Report for CCDS52563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52563.1 Public Mus musculus 8 Psd3 23 108 98 CCDS HistoryNCBI Gene:234353Re-query CCDS DB by CCDS ID:52563.1Re-query CCDS DB by GeneID:234353See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120071.7 ENSMUSP00000112545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120071.7Link to Ensembl Protein Viewer:ENSMUSP00000112545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120071Re-query CCDS DB by Protein ID:ENSMUSP00000112545
Original member NCBI NM_027626.1 NP_081902.1 Updated not alive Link to Nucleotide Sequence:NM_027626.1Link to Protein Sequence:NP_081902.1Re-query CCDS DB by Nucleotide ID:NM_027626Re-query CCDS DB by Protein ID:NP_081902
Current member NCBI NM_027626.2 NP_081902.1 Accepted alive Link to Nucleotide Sequence:NM_027626.2Link to Protein Sequence:NP_081902.1Re-query CCDS DB by Nucleotide ID:NM_027626Re-query CCDS DB by Protein ID:NP_081902Link to BLAST:NP_081902.1

Chromosomal Locations for CCDS 52563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 67696972 67697187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67713683 67713826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67719900 67720044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67720796 67720953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67741761 67741831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67758072 67758265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67790898 67790941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67817948 67818106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGATTGGCGTGAATAGTGTTCAGAGTGCCAGCAAGGTACGGGTGAGGACCTCAGGTTCTGTGAAGTACT
CCCGAGAGGATTCTATCCGGCGGCAGTCCCACCGGTCAAAGTCTATGAAAATTTCCAACTCCTCAGAGTT
TTCTGCTAAGGAGAGCAAGGCTCTGTACAACTCAATCAAGAACGAGAAGCTTGAATGGGCAGTAGATGAT
GAAGAGAAAAAAAAATCCCCCTCAGAAGGTACTGATGAGAAGGCTAATGGAACGCACCCAAAGACTATCA
GTCGTATTGGGAGTACAACGAACCCATTTTTGGACATTCCTCATGACCCGAATGCTGCTGTATACAAAAG
TGGATTTTTGGCTCGTAAAATCCACGCAGACATGGATGGAAAGAAGACTCCAAGAGGAAAGCGAGGATGG
AAAACCTTTTATGCTGTCCTGAAGGGAACCGTTCTTTACTTACAGAAGGATGAGTATAAGCCAGAGAAGT
CTCTGTCCGATGAAGACTTGAAGAATGCGGTGAGTGTGCACCACGCTCTGGCGTCCAAGGCCACTGACTA
TGAGAAGAAGCCGAACGTGTTTAAACTCAAGACTGCGGACTGGAGGGTCTTGCTTTTCCAAACCCAGAGT
CCAGAGGAAATGCAAGGCTGGATAAACAAAATTAACTGTGTGGCAGCTGTGTTTTCTGCACCGCCTTTCC
CAGCAGCCATTGGCTCTCAGAAGAAGTTTAGCCGCCCACTTCTGCCAGCCACTACAACAAAATTATCCCA
GGAGGAGCAGCTGAAGTCCCATGAAAGCAAGCTGAAGCAGATCACCACTGAGCTGGCTGAGCATCGCTCA
TATCCCCCAGACAAGAAGGTCAAAGCCAAGGATGTTGATGAGTACAAGCTGAAAGACCACTATCTGGAGT
TCGAGAAAACCCGTTATGAGATTTATGTCAGCGTTCTGAAAGAAGGAGGCAAAGAGCTCCTGACTACCGA
TGGAAATGAGCCCGTGGGACTGAAGAAGTCACACTCAAGTCCCTCCCTCAACCCAGATGCATCTCCAGTC
ACTGCCAAGGTCAAGCGCAACGTGTCAGAGAGAAAAGACCACCGACCTGAAACACCGGGCATTAAGCAAA
AAGTTACTTAG

Translation (376 aa):
MIGVNSVQSASKVRVRTSGSVKYSREDSIRRQSHRSKSMKISNSSEFSAKESKALYNSIKNEKLEWAVDD
EEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGW
KTFYAVLKGTVLYLQKDEYKPEKSLSDEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQS
PEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRS
YPPDKKVKAKDVDEYKLKDHYLEFEKTRYEIYVSVLKEGGKELLTTDGNEPVGLKKSHSSPSLNPDASPV
TAKVKRNVSERKDHRPETPGIKQKVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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