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Report for CCDS52358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52358.1 Public Mus musculus 7 Stk33 23 108 98 CCDS HistoryNCBI Gene:117229Re-query CCDS DB by CCDS ID:52358.1Re-query CCDS DB by GeneID:117229See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090414.10 ENSMUSP00000087897.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090414.10Link to Ensembl Protein Viewer:ENSMUSP00000087897.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090414Re-query CCDS DB by Protein ID:ENSMUSP00000087897
Original member Current member EBI ENSMUST00000106745.8 ENSMUSP00000102356.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106745.8Link to Ensembl Protein Viewer:ENSMUSP00000102356.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106745Re-query CCDS DB by Protein ID:ENSMUSP00000102356
Original member Current member EBI ENSMUST00000121748.7 ENSMUSP00000112515.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121748.7Link to Ensembl Protein Viewer:ENSMUSP00000112515.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121748Re-query CCDS DB by Protein ID:ENSMUSP00000112515
Original member Current member NCBI NM_054103.1 NP_473444.1 Accepted alive Link to Nucleotide Sequence:NM_054103.1Link to Protein Sequence:NP_473444.1Re-query CCDS DB by Nucleotide ID:NM_054103Re-query CCDS DB by Protein ID:NP_473444Link to BLAST:NP_473444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473444.1 491 Q924X7 491 100% 0 0

Chromosomal Locations for CCDS 52358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109279665 109279856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109312271 109312420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109320797 109320882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109321461 109321573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109325681 109325756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109327592 109327679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109329533 109329621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109331469 109331607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109336041 109336145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109338320 109338433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109340369 109340479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109341289 109341501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGCTGACCCCAGCTTGAATGACAACCCTACAGCATGCCCTCACTGTGCATCCTCTCAGGCTGGCCTAC
TGTGTGTATGTCCAGCAGGCAAGTCTCCAGTCCTGGTGGTGGAAATGTCACAGACATCGAGTATTGGTAG
TACAGAATTTTTTGCTTCACAAGAAAGAAAAAAGGAAAGAAATACCAGCAGAGAATCTTCTCTAAAAGAT
TTGTCCATAAGAACTTCAAATGTGGAGAGAAAACCTCAGGCACAATGGAGTCGGAGCAATGTCACAGTAG
GAAAAATCCCACACATAAGAATGGACGATGGAGCAGGTATCGAGGAATTCTATACCTTTGGAAGAATATT
GGGACAGGGGAGCTTTGGAATGGTCTTTGAAGCTATAGACAAGGAAACAGGAGCTAAGTGGGCAATTAAA
AAAGTGAATAAAGAAAAGGCTGGAAGTTCTGCAATGAAGCTACTGGAGCGGGAGGTGAGCATCCTGAAGA
CTGTCAACCATCAACACATCATCCACCTGGAACAAGTGTTTGAGTCGCCTCAGAAAATGTATCTCGTGAT
GGAGCTTTGTGAGGATGGAGAACTCAAAGCAGTTATGGATCAAAGAGGGCACTTCTCAGAGAACGAGACA
AGGCTGATAATTCAAAGTCTTGCATCAGCCATCGCATATCTTCATAACAAGGATATAGTGCACAGAGATC
TAAAGCTGGAAAACATAATGGTTAAAAGCAGCTTTATAGATGATAACAATGAAATGAACTTAAACATAAA
GGTGACTGATTTTGGCTTGTCTGTGCAGAAGCATGGCTCCAGGAGTGAAGGCATGATGCAGACTACATGT
GGGACTCCTATCTATATGGCACCAGAGGTCATCAATGCCCATGACTACAGCCAGCAGTGTGACATTTGGA
GCATAGGTGTCATAATGTTCATTTTACTGTGTGGAGAGCCACCCTTTTTGGCAAATTCAGAAGAAAAGCT
CTATGAATTAATAAAAAAGGGAGAACTACGATTTGAAAATCCAGTCTGGGAATCTGTAAGTGATTCTGCA
AAAAATACTTTGAAACAACTCATGAAAGTAGATCCTGCTCACAGAATCACAGCTAAGGAACTTCTAGATA
ACCAATGGTTGACAGGCAATACCCTTTCTTCAGCAAGACCAACCAATGTATTAGAAATGATGAAAGAATG
GAAAAATAACCCAGAAAGTGATGAGGAGACCAACACAGATGAGGAGACTGAGCAGAGCGCTGTCTACAGT
CCATCTGCAAACACAGCAAAGCAGCCCACCAATGCAGCCAAGAAGCCTGCTGCAGAGAGTGTTGGCATGA
CCTCTTCAAACTCATCGTCCAGCAAACTCCTGTCTGCTGAAAGCAAAGCAGAACCAGAGAAAAGCTCCGA
GACTGTAGGCCATGCATCAGTGGCTAAAACCACTCTGAAATCCACTACCTTGTTTCGAGGCAAGAAAAGG
CTCTAA

Translation (491 aa):
MADPSLNDNPTACPHCASSQAGLLCVCPAGKSPVLVVEMSQTSSIGSTEFFASQERKKERNTSRESSLKD
LSIRTSNVERKPQAQWSRSNVTVGKIPHIRMDDGAGIEEFYTFGRILGQGSFGMVFEAIDKETGAKWAIK
KVNKEKAGSSAMKLLEREVSILKTVNHQHIIHLEQVFESPQKMYLVMELCEDGELKAVMDQRGHFSENET
RLIIQSLASAIAYLHNKDIVHRDLKLENIMVKSSFIDDNNEMNLNIKVTDFGLSVQKHGSRSEGMMQTTC
GTPIYMAPEVINAHDYSQQCDIWSIGVIMFILLCGEPPFLANSEEKLYELIKKGELRFENPVWESVSDSA
KNTLKQLMKVDPAHRITAKELLDNQWLTGNTLSSARPTNVLEMMKEWKNNPESDEETNTDEETEQSAVYS
PSANTAKQPTNAAKKPAAESVGMTSSNSSSSKLLSAESKAEPEKSSETVGHASVAKTTLKSTTLFRGKKR
L


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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