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Report for CCDS52260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52260.1 Public Mus musculus 7 Htatip2 23 108 98 CCDS HistoryNCBI Gene:53415Re-query CCDS DB by CCDS ID:52260.1Re-query CCDS DB by GeneID:53415See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085272.6 ENSMUSP00000082374.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085272.6Link to Ensembl Protein Viewer:ENSMUSP00000082374.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085272Re-query CCDS DB by Protein ID:ENSMUSP00000082374
Original member Current member NCBI NM_001146049.1 NP_001139521.1 Accepted alive Link to Nucleotide Sequence:NM_001146049.1Link to Protein Sequence:NP_001139521.1Re-query CCDS DB by Nucleotide ID:NM_001146049Re-query CCDS DB by Protein ID:NP_001139521Link to BLAST:NP_001139521.1
Original member Current member NCBI NM_001146050.1 NP_001139522.1 Accepted alive Link to Nucleotide Sequence:NM_001146050.1Link to Protein Sequence:NP_001139522.1Re-query CCDS DB by Nucleotide ID:NM_001146050Re-query CCDS DB by Protein ID:NP_001139522Link to BLAST:NP_001139522.1
Original member Current member NCBI NM_001146052.1 NP_001139524.1 Accepted alive Link to Nucleotide Sequence:NM_001146052.1Link to Protein Sequence:NP_001139524.1Re-query CCDS DB by Nucleotide ID:NM_001146052Re-query CCDS DB by Protein ID:NP_001139524Link to BLAST:NP_001139524.1
Original member Current member NCBI NM_001146053.1 NP_001139525.1 Accepted alive Link to Nucleotide Sequence:NM_001146053.1Link to Protein Sequence:NP_001139525.1Re-query CCDS DB by Nucleotide ID:NM_001146053Re-query CCDS DB by Protein ID:NP_001139525Link to BLAST:NP_001139525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139521.1 242 Q9Z2G9-1 242 100% 0 0
NP_001139522.1 242 Q9Z2G9-1 242 100% 0 0
NP_001139524.1 242 Q9Z2G9-1 242 100% 0 0
NP_001139525.1 242 Q9Z2G9-1 242 100% 0 0

Chromosomal Locations for CCDS 52260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 49759599 49759793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49762060 49762167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49770810 49770947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49772576 49772637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49773301 49773526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCGGACAAGGAAGCACTGCCGAAGCTTCGGGAAGACTTCAAGATGCAGAATAAATCCGTCTTTATTT
TGGGCGCCAGCGGGGAAACTGGCAAAGTACTTTTAAAGGAAATCCTGGGACAGAACCTGTTTTCCAAAGT
AACGCTCATTGGTCGGAGGAAGCTCACCTTCGAGGAGGAAGCTTATAAAAATGTGAATCAAGAAGTGGTG
GACTTTGAGAAGCTGGATGTCTATGCTTCTGCCTTTCAAGGTCATGATGTTGGATTCTGTTGCCTGGGCA
CCACCAGAAGCAAGGCTGGAGCGGAAGGGTTTGTTCGTGTTGACCGAGATTATGTGCTCAAGTCTGCAGA
GCTGGCGAAAGCAGGAGGGTGCAAACATTTCAACTTGCTGTCCTCCAGGGGGGCCGATAAGTCCAGCAGT
TTCTTATACCTACAAGTAAAGGGAGAAGTGGAAGCCAAGGTTGAAGAATTAAAGTTTGATCGACTCTCAG
TGTTTCGGCCAGGAGTCCTACTGTGTGACAGGCAAGAGTCTCGTCCAGGCGAATGGCTGGCTAGGAAATT
CTTCGGCTCTCTGCCAGACTCTTGGGCCAGTGGGTACGCTGTGCCTGTGGTGACGGTGGTTAGAGCGATG
CTGAACAACCTGGTGAGTCCCAGCAGCGGACAAATGGAACTTCTGGAAAATAAGGCCATCCTCCACCTGG
GGAAAGACAGGGATGTGCCCAAACTGTGA

Translation (242 aa):
MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEEAYKNVNQEVV
DFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSRGADKSSS
FLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPGEWLARKFFGSLPDSWASGYAVPVVTVVRAM
LNNLVSPSSGQMELLENKAILHLGKDRDVPKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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