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Report for CCDS51919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51919.1 Reviewed, update pending Mus musculus 6 Klrb1c 23 108 98 CCDS HistoryNCBI Gene:17059Re-query CCDS DB by CCDS ID:51919.1Re-query CCDS DB by GeneID:17059See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 51919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174404.7 ENSMUSP00000134504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174404.7Link to Ensembl Protein Viewer:ENSMUSP00000134504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174404Re-query CCDS DB by Protein ID:ENSMUSP00000134504
Original member NCBI NM_001159904.1 NP_001153376.1 Updated not alive Link to Nucleotide Sequence:NM_001159904.1Link to Protein Sequence:NP_001153376.1Re-query CCDS DB by Nucleotide ID:NM_001159904Re-query CCDS DB by Protein ID:NP_001153376
Current member NCBI NM_001159904.2 NP_001153376.2 Pending alive Link to Nucleotide Sequence:NM_001159904.2Link to Protein Sequence:NP_001153376.2Re-query CCDS DB by Nucleotide ID:NM_001159904Re-query CCDS DB by Protein ID:NP_001153376Link to BLAST:NP_001153376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153376.2 223 P27814-1 223 100% 0 0

Chromosomal Locations for CCDS 51919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128780285 128780426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128783664 128783779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128784105 128784259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128784737 128784811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128785925 128786023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128788397 128788625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGAGAAACCCTCAGAGACAGGAATCAGTGGGTGTGGGAACAGAGCAGAGCATTCACAGAGGACTTTCT
TTTGCTTATTTCACCTCAAAGGCCTTGGAGTTTGTCCCTTCTCACCACCAGTTAAGTGTTGCATCTCCTG
TGAAATGGACACAGCAAGTATCTACCTCGGTTTAAAGCCACCCAGGACACTGGGGGCTTGGCATGAGTCA
CCCCCATCTCTTCCCCCAGATGCCTGTCGGTGCCCACGTTCACACAGGTTGGCTCTGAAGCTCAGCTGTG
CTGGGCTCATCCTCCTTGTCCTGACCCTGATTGGGATGAGTGTCTTAGTGCGAGTCTTAGTACAAAAACC
ATCAAGAGAAAAATGCTGTGTGTTTATTCAAGAGAACCTGAATAAAACAACAGATTGTTCAGTTAATTTA
GAGTGCCCACAAGACTGGCTTTTACACCGAGATAAGTGCTTTCACGTTTCTCAAGTTTCCAACACTTGGG
AGGAAGGTCAAGCTGACTGTGGTAGAAAAGGAGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACTGAG
ATTCCTACTGGACTCAATAAAGGAAAAATATAATTCATTTTGGATTGGACTAAGGTTCACATTGCCAGAC
ATGAACTGGAAGTGGATAAATGGCACAACTTTCAATTCTGATGTACTAAAAATCACTGGTGTCACTGAAA
ATGGCAGCTGTGCCTCCATCTTAGGAGATAAAGTGACTCCTGAGAGCTGTGCTTCAGACAACCGTTGGAT
CTGCCAAAAGGAACTAAACCATGAAACCCCGAGTAATGACTCCTGA

Translation (271 aa):
MEKPSETGISGCGNRAEHSQRTFFCLFHLKGLGVCPFSPPVKCCISCEMDTASIYLGLKPPRTLGAWHES
PPSLPPDACRCPRSHRLALKLSCAGLILLVLTLIGMSVLVRVLVQKPSREKCCVFIQENLNKTTDCSVNL
ECPQDWLLHRDKCFHVSQVSNTWEEGQADCGRKGATLLLIQDQEELRFLLDSIKEKYNSFWIGLRFTLPD
MNWKWINGTTFNSDVLKITGVTENGSCASILGDKVTPESCASDNRWICQKELNHETPSNDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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