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Report for CCDS51799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51799.1 Public Mus musculus 6 Mmrn1 23 108 98 CCDS HistoryNCBI Gene:70945Re-query CCDS DB by CCDS ID:51799.1Re-query CCDS DB by GeneID:70945See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51799.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129603.3 ENSMUSP00000119609.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129603.3Link to Ensembl Protein Viewer:ENSMUSP00000119609.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129603Re-query CCDS DB by Protein ID:ENSMUSP00000119609
Original member Current member NCBI NM_027613.1 NP_081889.1 Accepted alive Link to Nucleotide Sequence:NM_027613.1Link to Protein Sequence:NP_081889.1Re-query CCDS DB by Nucleotide ID:NM_027613Re-query CCDS DB by Protein ID:NP_081889Link to BLAST:NP_081889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081889.1 1210 B2RPV6-1 1210 99.5868% 0 5

Chromosomal Locations for CCDS 51799.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 60944561 60945138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60958100 60958219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60960718 60960824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60971080 60971181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60972975 60973148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60975818 60977794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60987074 60987226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60988198 60988619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3633 nt):
ATGCTGGGACTAAAGTTTCTTGTCCTGCTTTCTATTTTATGGGGCAGGGTCTTCAGGCTTACCAACACTC
AACATTCATGGACTGCGCCTAAGGATGAAGACGCCTCACTGACCCCGAACCCCGCTTCAGCTTCTGTAAG
TGAAATACTGAGCCTCCAAGTGCTCTCGGCCACTCAGAACCCCTCCACTCAGGGTCCTGCAGCTGCTGAG
AGATCTTCTGAAGACGATGTTCTCCTACAGTCAACATCACAGCCCTCTGAGACAAGCACCCCTCCTGACG
GGAGAAGCCAAACATCCCTAGAGAAGACAGGGACAGCAGTGGTATCCCTGCCTCTCTCTCTTCAGGACAA
ACCCAGCATCAAGCCCAGCACCGGAGCAGGAACTGTCATGCTTGCTAATGCCACGTTGAAATTCCTTCAG
AGTTTTTCCAGAAAGTCTGATCAACAAGAAGTCTCCACTAAGTCGGCTGGCGACATGGGAAACAGGTCTG
CAAGGGAAACACACCTCAGGAGAAGTGACAACAGCAGAAATCAAAGACCCAGCTATCAAAAACCCAGTTT
TGAAACAACTAGAGGGAAGAATTGGTGTGCTCATGTTCATACCAAGTTATCCCCGACAGTGATACTGGAC
ACTGGCTCTCATTTACCAAGTGGAAGAGGTTCTTGTGGCTGGTACAGCAGTGGACTCTGTTCCAGAAGAT
CTCAGAAGACATCCAATGCTGTCTATAGAATGCAGCATAAGATTGTCACCTCATTAGAATGGAGATGCTG
TCCTGGATACATAGGTCCAAACTGTCAGCTCAAAGTGGAAGAACAGCAGCAGCTGGCACACAGTAACCAG
GCTGAAAGTCACACCGCTGTTGACCAAGGAAGAGCTCAGCAGCAGAAGCAAGACTGTGGTGACCCAGCCA
TGATTCAAAAACTGGCAGAGCAGCTGAGCCAACAGGAGAGGAAGCTGTCGCTTCTGCAGAAGAAGGTTGA
CAATGCTTCTCTGGTGGCAGATGACATGAGGAATGCATACCTCTCACTAGAAGGGAAAGTTGGAGAGGAC
AACAGCAGGCAATTTCAATCTTTTCTAAAAGCTCTAAAATCAAAGAGTATTGAGGATCTGCTAAAGAACA
TCGTAAAAGAACAATTTAAAGTCTTCCAAGATGATATGCAGGAGACGACTGCCCAGATCTTCAAGACTGT
GTCAAGTCTATCAGAGGACTTGGAAAGTACCAGGCAGGCAGTTCTACAAGTGAACCAGTCCTTTGTTTCA
TCAACAGCCCAGAAAGACTTTGCTTTCATGCAAGAAAATCAGCCCACGTGGAAGGACATCACAGATCTAA
AGAACAGCATCATGAACATCAGGCAGGAAATGGCCTTGACCTGTGAGAAGCCTGTCAAGGAACTGGAAGC
AAAACAAGCTCATTTGGAAGGAGCACTAAGACAGGAGCACTCACAGATTGTTCTGTACCACCAATCCCTC
AATGAAACTCTCTCTAAAATGCAGGAAGCACACACACAGCTGTTATCAGTTCTACAAGTATCAGGAACAG
AGAATGTCGCCACTGAGGAATCCCTCAACAGTAATGTCACTAAGTATATATCTGTACTACAGGAGACAGC
AAGCAAGCAAGGTCTGATGCTGCTGCAGATGCTCAGTGATTTGCATGTCCAAGAGAGCAAGATCAGCAAC
CTTACCATCCTTTTGGAGATGGAGAAAGAATCAGCCAGGGGAGAATGTGAGGAAATGCTATCTAAATGCA
GGCATGACTTTAAATTTCAACTCAAGGACACAGAGGAAAATCTGCATGTGTTAAATCAAACACTGTCTGA
GGTTATCTTTCCCATGGACATCAAGGTGGATAAAATGAGTGAGCAGCTGAATGATTTGACATATGACATG
GAGATCCTTCAGCCTTTGCTGGAGCAGAGGTCGTCGCTTCAACACCAGGTTATACACAAGCCAAAGGAAG
CCACAGTTACTCGCAGAGAGCTACAAAACCTGATCGGTGCCATCAACCAACTGAACGTTCTTACCAAAGA
ACTTACAAAAAGACACAACTTACTGAGAAATGAAGTGCAGAGCCGTGGTGAAGCCTTTGAGAGACGCATC
AGTGAGCATGCCTTAGAAACAGAAGATGGCCTAAATAAGACAATGACTGTTATAAACAATGCCATCGATT
TTGTTCAAGATAACTATGTGTTAAAGGAGACTTTAAGTGCTATGACATATAATCCCAAGGTTTGTGAGTG
TAACCAAAATATGGACAATATTTTAACATTTGTTTCTGAATTCCAGCATTTGAATGATTCTATTCAGACT
TTGGTCAATAACAAAGAGAAGTATAATTTTATTTTGCAAATTGCTAAAGCCCTTACAGCGATTCCTAAAG
ATGAGAAACTAAACCAGTTAAACTTTCAAAATATTTATCAACTATTCAATGAAACCACTTCCCAGGTGAA
CAAATGTCAGCAAAACATGAGTCATTTAGAAGAAAATATGCTTTCAGTAACAAAGACTGCCAAAGAGTTT
GAAACTCGTTTGCAAGGCATTGAATCTAAAGTGACCAAGACACTCATACCTTACTATATTTCATTTAAAA
AAGGTGGCATCCTATCAAATGAGAGAGATGTTGATCTTCAGCTGAAGGTACTAAATACCAGATTTAAGGC
ACTGGAAGCAAAGTCCATCCATCTTTCCGTGAGTTTCTCTTTGCTTAATAAAACTGTCCGTGAGCTTTCA
ATGGCATGCCGTAATGCTTCTACAGGTACCTGTGGACAGAATGCACTCATACCCAGGTGGACCAAAGGCT
CACTGCCAGGCAGTCAGAGTTCTCAGAAAAGTCTGACAGAACTTGTGGAATCAATAGTTGAAATTAAAAC
TCAAGCCGCCCTATCTAATTTAACTTGGAATGTTGACCGATTGTTATCTGACACTCTGGCAAATATTGTC
AAGCCTCAAAAGCAGATAAAATTGCAGAAGAAACCCAACACACTTAAGAAAACGGTGAACATGACCACCA
TTCTGATAGGCCGAACACAAAGGAACACAGACACCATTATACATCCTGTAGCACAGGAACATTCCAGCTG
CAGCAGCTTCCCGTGCCAGAATGGTGGCACATGCATCAGCGGGAGATCCAACTTCATCTGCGCTTGCCGG
CACCCGTTCATGGGTGACACTTGCACCGTGAAGATCAAGGAAGATGATGCAGTAGCACCAGATTTTTCCA
AAGGATCTTACAGATATGCTCCGATGGTGGCGTTTTTCGTATCTCACACTCACGGAATGACGGCACCTGG
TCCTATCCTGTTCAATGATCTAAGCGTCAACTATGGGGCCTCATATAACCCAAGGACTGGCAAGTTCAGA
ATTCCATACCTTGGAGTGTATATTTTCAAATACACCATTGAGTCATTCAGTGCTCATATCTCCGGTTTTT
TTGTGGTGGATGGAGTAGACAAACTTAGATTTGAGTCTGAAAATGCTGACAATGAGATACACTGTGACAG
AGTTTTGACTGGGGATGCCTTATTTGAATTAAATTACGGACAGGAAGTGTGGTTGCGACTTGTAAAAGGA
ACAATTCCAATCAAATATCCCCCTGTGACCACGTTCAGTGGTTACTTGTTATATCGCACCTAA

Translation (1210 aa):
MLGLKFLVLLSILWGRVFRLTNTQHSWTAPKDEDASLTPNPASASVSEILSLQVLSATQNPSTQGPAAAE
RSSEDDVLLQSTSQPSETSTPPDGRSQTSLEKTGTAVVSLPLSLQDKPSIKPSTGAGTVMLANATLKFLQ
SFSRKSDQQEVSTKSAGDMGNRSARETHLRRSDNSRNQRPSYQKPSFETTRGKNWCAHVHTKLSPTVILD
TGSHLPSGRGSCGWYSSGLCSRRSQKTSNAVYRMQHKIVTSLEWRCCPGYIGPNCQLKVEEQQQLAHSNQ
AESHTAVDQGRAQQQKQDCGDPAMIQKLAEQLSQQERKLSLLQKKVDNASLVADDMRNAYLSLEGKVGED
NSRQFQSFLKALKSKSIEDLLKNIVKEQFKVFQDDMQETTAQIFKTVSSLSEDLESTRQAVLQVNQSFVS
STAQKDFAFMQENQPTWKDITDLKNSIMNIRQEMALTCEKPVKELEAKQAHLEGALRQEHSQIVLYHQSL
NETLSKMQEAHTQLLSVLQVSGTENVATEESLNSNVTKYISVLQETASKQGLMLLQMLSDLHVQESKISN
LTILLEMEKESARGECEEMLSKCRHDFKFQLKDTEENLHVLNQTLSEVIFPMDIKVDKMSEQLNDLTYDM
EILQPLLEQRSSLQHQVIHKPKEATVTRRELQNLIGAINQLNVLTKELTKRHNLLRNEVQSRGEAFERRI
SEHALETEDGLNKTMTVINNAIDFVQDNYVLKETLSAMTYNPKVCECNQNMDNILTFVSEFQHLNDSIQT
LVNNKEKYNFILQIAKALTAIPKDEKLNQLNFQNIYQLFNETTSQVNKCQQNMSHLEENMLSVTKTAKEF
ETRLQGIESKVTKTLIPYYISFKKGGILSNERDVDLQLKVLNTRFKALEAKSIHLSVSFSLLNKTVRELS
MACRNASTGTCGQNALIPRWTKGSLPGSQSSQKSLTELVESIVEIKTQAALSNLTWNVDRLLSDTLANIV
KPQKQIKLQKKPNTLKKTVNMTTILIGRTQRNTDTIIHPVAQEHSSCSSFPCQNGGTCISGRSNFICACR
HPFMGDTCTVKIKEDDAVAPDFSKGSYRYAPMVAFFVSHTHGMTAPGPILFNDLSVNYGASYNPRTGKFR
IPYLGVYIFKYTIESFSAHISGFFVVDGVDKLRFESENADNEIHCDRVLTGDALFELNYGQEVWLRLVKG
TIPIKYPPVTTFSGYLLYRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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