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Report for CCDS51458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51458.1 Public Mus musculus 5 Zfp513 23 108 98 CCDS HistoryNCBI Gene:101023Re-query CCDS DB by CCDS ID:51458.1Re-query CCDS DB by GeneID:101023See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031562.10 ENSMUSP00000031562.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031562.10Link to Ensembl Protein Viewer:ENSMUSP00000031562.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031562Re-query CCDS DB by Protein ID:ENSMUSP00000031562
Original member Current member NCBI NM_001177901.1 NP_001171372.1 Accepted alive Link to Nucleotide Sequence:NM_001177901.1Link to Protein Sequence:NP_001171372.1Re-query CCDS DB by Nucleotide ID:NM_001177901Re-query CCDS DB by Protein ID:NP_001171372Link to BLAST:NP_001171372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171372.1 539 Q6PD29-2 539 100% 0 0

Chromosomal Locations for CCDS 51458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31199321 31200147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31200235 31200822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31201583 31201787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGGTACTGCTTGGGAGGGAGATTCCACAAGCACCCTCCCCTCTTTAGTGGATACTGAAGATTCCTTCG
ACGAAGGTCCTGGGGCCCTGGTGTTGGAGAGCGATTTGCTACTAGGCCAAGATCTGGAGTTTGAAGAGGA
AGAGGAAGAGGATGAAGGTGACGGCCACAACGACCAGCTCATGGGCTTTGAGAGAGACTCTGAAGGAGAC
TCTCAGGGGGCCAGACCTGGACTTCCCTATGGGCTGAGTGACGACGAGTCTGGGGGCGGCCGCGCACTAA
GTGCGGAGAGTGAAGTTGAGGAACCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGC
CTGTCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAGGAGGGCCGGGTGGGGGGCCC
CCGCTGCCCCCACGGCTACTGTACTCATGCCGGCTGTGCGCCTTCGTGTCCCACTACTCGAGCCACCTGA
AGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCA
GCTCGTCAACCTGACGCGACATACCCGCACCCATACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCC
TTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGCACCCACACAGGGCCTCCCACTCCTCCCT
GCCCAACCTGTGGCTTTCGATGCTGTGCTCCACGACCAACCCGGCCTCCCAGTCCCACAGAGCAGGAGGG
GACAATGCCCCGACGATCAGAAGATGCGCTGATCCTGCCAGACTTGAGTCTTCATGTGCCACCAGGTGGT
GCCAGTTTCCTGCCAGACTGTGGGCAGCTGCGGGGTGAAGGGGAGAGCTTGTGTGGAACTGGATCCGAAC
CACTGCCAGAGCTACTGTTCCCTTGGACCTGCCGGGGCTGTGGACAGGAACTGGAGGAGGGTGAGGGCAG
CAGGCTGGGAGCTGCCATGTGTGGGCGCTGCATGCGAGGAGAGGCTGGAGGGGTTGCCACTGGGGGACCC
CAGGGCCCTGGTGACAAAGGCTTTGCCTGTAGTTTATGCCCCTTTGCCACTCACTACCCCAACCACCTGG
CTCGGCACATGAAGACTCACAGTGGTGAGAAACCCTTCCGCTGTGCCCGCTGTCCATACGCCTCTGCTCA
TCTGGATAACCTGAAACGGCACCAGCGCGTCCACACAGGAGAAAAGCCCTACAAGTGCCCCCTCTGTCCG
TATGCCTGTGGCAACCTGGCCAACCTCAAGCGTCATGGTCGCATCCACTCTGGTGACAAACCTTTTCGGT
GTAGCCTTTGCAACTACAGCTGCAACCAGAGTATGAACCTCAAACGTCATATGCTGCGACACACGGGCGA
GAAGCCCTTCCGCTGTGCCACCTGCGCCTATACCACAGGCCACTGGGACAACTACAAGCGTCATCAGAAG
GTGCATGGCCATGGTGGAGCAGGAGGGCCTGGTCTCTCTGCCCCTGAGGGCTGGGCCCCACCTCATAGCC
CACCCTCTGTTTTGAGCACTCGGGGTCCAGCAGCCCTGGGTGCTACTGGTAGCAGGGCTCTTCATTCAGA
CTCACCTTGA

Translation (539 aa):
MGTAWEGDSTSTLPSLVDTEDSFDEGPGALVLESDLLLGQDLEFEEEEEEDEGDGHNDQLMGFERDSEGD
SQGARPGLPYGLSDDESGGGRALSAESEVEEPARGPGEARGERPGPACQLCGGPTGEGPCCGAGGPGGGP
PLPPRLLYSCRLCAFVSHYSSHLKRHMQTHSGEKPFRCGRCPYASAQLVNLTRHTRTHTGEKPYRCPHCP
FACSSLGNLRRHQRTHTGPPTPPCPTCGFRCCAPRPTRPPSPTEQEGTMPRRSEDALILPDLSLHVPPGG
ASFLPDCGQLRGEGESLCGTGSEPLPELLFPWTCRGCGQELEEGEGSRLGAAMCGRCMRGEAGGVATGGP
QGPGDKGFACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCPLCP
YACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLKRHMLRHTGEKPFRCATCAYTTGHWDNYKRHQK
VHGHGGAGGPGLSAPEGWAPPHSPPSVLSTRGPAALGATGSRALHSDSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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