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Report for CCDS51275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51275.1 Public Mus musculus 4 Lurap1 23 108 98 CCDS HistoryNCBI Gene:68075Re-query CCDS DB by CCDS ID:51275.1Re-query CCDS DB by GeneID:68075See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030469.4 ENSMUSP00000030469.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030469.4Link to Ensembl Protein Viewer:ENSMUSP00000030469.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030469Re-query CCDS DB by Protein ID:ENSMUSP00000030469
Original member Current member NCBI NM_026547.1 NP_080823.1 Accepted alive Link to Nucleotide Sequence:NM_026547.1Link to Protein Sequence:NP_080823.1Re-query CCDS DB by Nucleotide ID:NM_026547Re-query CCDS DB by Protein ID:NP_080823Link to BLAST:NP_080823.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080823.1 239 Q9D6I9 239 100% 0 0

Chromosomal Locations for CCDS 51275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116137313 116137834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116144297 116144494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGAGGGGACCGCGGAGTCCCAGACGCCGGACTTGCGAGACGTGGAGGGCAAGGTGGGCAGGAAGATCC
CT
GAAGGACTGCTCCGCGGGCTTCGAGGCGAGTGCGAGCTGGGAACCTCTGGGGACGTGCTGCTCCCGGG
G
GCGCCCAGCACCGGCCACGGCCTAGGGGACAAGATCATGGCGCTGAGGATGGAGCTGGCTTACCTGCGA
GCT
ATCGATGTGAAGATCCTGCAGCAGCTGGTGACCTTGAACGAGGGTATTGAGGCAGTGCGCTGGCTGC
TG
GAGGAGCGGGGTACACTGACGAGCCATTGCAGCAGTCTCACCAGCAGTCAGTACAGTCTGACAGGGGG
A
AGCCCAGGACGCTCAAGGCGGGGCAGTTGGGACAGCCTGCCAGACACCAGTTCAACTGACCGGCTGGAC
AGT
GTCTCTATTGGCAGCTTCTTGGACACTGTGACCCCCAGAGAGCTGGATGAACAAGGACTCCCTGGGC
CT
TCCTGTCCTGAGATTGACTGGGCAAAGGTTATCCCCACTGAGGACAGGGCCAGGACTGAGGTGGACAT
G
ACATCCACTAAGCTAGGGAGCTTAACAGCCACATGGAAGCTCCCGGGGGATGGGCTCCAGTGTGGACCA
CCT
GAGCCATCAGAGGATGGCAATGCTAACCAGGGCTTTGAAGCTCATTGGTACTGGGGACAGTGCCAGG
AT
GATGTGACCTTCTTGTAA


Translation (239 aa):
MEGTAESQTPDLRDVEGKVGRKIPEGLLRGLRGECELGTSGDVLLPGAPSTGHGLGDKIMALRMELAYLR
A
IDVKILQQLVTLNEGIEAVRWLLEERGTLTSHCSSLTSSQYSLTGGSPGRSRRGSWDSLPDTSSTDRLD
S
VSIGSFLDTVTPRELDEQGLPGPSCPEIDWAKVIPTEDRARTEVDMTSTKLGSLTATWKLPGDGLQCGP
P
EPSEDGNANQGFEAHWYWGQCQDDVTFL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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