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Report for CCDS51260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51260.1 Public Mus musculus 4 Ttc39a 23 108 98 CCDS HistoryNCBI Gene:230603Re-query CCDS DB by CCDS ID:51260.1Re-query CCDS DB by GeneID:230603See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106618.7 ENSMUSP00000102229.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106618.7Link to Ensembl Protein Viewer:ENSMUSP00000102229.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106618Re-query CCDS DB by Protein ID:ENSMUSP00000102229
Original member NCBI NM_001145948.1 NP_001139420.1 Updated not alive Link to Nucleotide Sequence:NM_001145948.1Link to Protein Sequence:NP_001139420.1Re-query CCDS DB by Nucleotide ID:NM_001145948Re-query CCDS DB by Protein ID:NP_001139420
Current member NCBI NM_001145948.2 NP_001139420.1 Accepted alive Link to Nucleotide Sequence:NM_001145948.2Link to Protein Sequence:NP_001139420.1Re-query CCDS DB by Nucleotide ID:NM_001145948Re-query CCDS DB by Protein ID:NP_001139420Link to BLAST:NP_001139420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139420.1 578 A2ACP1-1 578 100% 0 0

Chromosomal Locations for CCDS 51260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109415704 109415747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109415987 109416091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109421293 109421424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109422446 109422522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109422875 109422942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109426301 109426365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109428131 109428230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109428887 109428952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109430856 109430964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109431391 109431458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109431539 109431598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109432989 109433150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109438749 109438840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109440522 109440642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109442227 109442338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109442697 109442811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109443508 109443624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109444082 109444205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGGTCAGAAGGGCCACAAGGACTCCCTTTATGATTGTAAAGGGTCTCCTGTGAGCAGCCTCCATGAGG
CCCTGGACCAGTGCATGACAGCCCTGGACCTCTTCCTTACCAACCAGTTCTCAGAAGCACTCAGCTACCT
CAAACCCAGAACCAAGGAGAGCATGTATCACTCCCTGACGTATGCCACCATCCTGGAGATGCAGGCCATG
ATGACCTTCGACCCCCAGGACATCCTGCTTGCTGGCAACATGATGAAAGAAGCGCAGTCGCTGTGTCAGA
GGCATCGAAGGAAGTCTTCTATGACGGACTCATTCAGCAACCTGGTGCACCGTCCTACCATTGACCAGTT
CACAGAAGAGGAAATCCATGCAGAGGTCTGTTATGCAGAATGCCTACTACAGAGAGCGGCCCTGACCTTC
CTGCAGGACGAGAACATGGTGAGCTTCATCAAGGGCGGCATCAAAGTGCGGAACAGCTACCAGACTTACA
AGGAACTGGATAGCCTCGTCCAGTCCTCGCAATACTCTAAGGGAGAGAGCCACAGACACTTTGAAGGAGG
GGTGAAGCTTGGCGTAGGAGCCTTCAACCTGACGCTGTCCATGCTTCCCACCAGGATTCTGAGGCTGCTG
GAGTTTGTTGGGTTTTCAGGAAACAAGGACTATGGGCTGCTGCAGCTGGAGGAGGGCGCAACCGGACACA
GCTTCCGTGCAGTGCTGTGCGTCATGCTGTTGCTGTGTTATCACACCTTCCTCACCTTCGTGCTCGGTAC
TGGGAATGTCAACATCGAGGAGGCAGAGAAGCTGCTGAAGCCCTACCTGAACCGATACCCCAAGGGCGCC
ATCTTCCTGTTCTTTGCTGGGCGGATTGAAGCTATCAAAGGAAATATTGATGCTGCTGTCCGGCGGTTTG
AGGAGTGCTGCGAGGCCCAGCAGCACTGGAAGCAGTTTCACCACATGTGCTACTGGGAGCTGATGTGGTG
CTTTACCTACAAGGGCCAGTGGAAAATGGCCTACTTCTACGCCGACCTGCTGAGCAAGGAGAACTCCTGG
TCCAAGGCCACCTACATCTACATGAAGGCTGCCTACCTCAGCATGTTTGGGAAGGAAGACTACAAGCCAT
TCGGGGACAATGAAGTGGAGTTATTCAGGGCCGTGCCAGGCTTGAAGCTCAAGATTGCTGGGAAATCTCT
ACCCACAGAGAAGTTTGCTATCCGGAAGTCCAGGCGCTACCTCTCCCCCAACCCCATCTCCTTGCCGATC
CCTGCTCTGGAAATGATGTACATCTGGAATGGCTATGCTGTGATTGGGAAGCAGCCGACACTCACGGATG
GGATGCTGGAGGTCATCACCAAGGCTGAAGAGATGCTGGCAATGGGCCCAGAGAATGAGTACTCAGCAGA
TGACGACTGCTTGGTTAAATTGCTGAAAGGCCTGTGTCTGAAATACCTGGGCCGAATCCAGGAGGCAGAG
GAGAATTTCAGGAGCATTTCTGCCAATGAAAAGAAGATTAAATATGACCATTACTTGATTCCAAATGCCC
TACTGGAACTGGCCCTGCTATTTATGGAGCAAGGCAGAAATGAGGAGGCCATCAAACTCTTAGAGTCTGC
AAAGCAAAACTACAAGAACTACTCCATGGAGTCAAGGACACATTTTCGAATCCAGGCAGCCACACTCCAG
GCCAGATCTTCCCTAGAAGATGGCAACAGATCTCTAGTCTCGTCAGTGTCCTTGTAG

Translation (578 aa):
MGQKGHKDSLYDCKGSPVSSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAM
MTFDPQDILLAGNMMKEAQSLCQRHRRKSSMTDSFSNLVHRPTIDQFTEEEIHAEVCYAECLLQRAALTF
LQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYSKGESHRHFEGGVKLGVGAFNLTLSMLPTRILRLL
EFVGFSGNKDYGLLQLEEGATGHSFRAVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGA
IFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMAYFYADLLSKENSW
SKATYIYMKAAYLSMFGKEDYKPFGDNEVELFRAVPGLKLKIAGKSLPTEKFAIRKSRRYLSPNPISLPI
PALEMMYIWNGYAVIGKQPTLTDGMLEVITKAEEMLAMGPENEYSADDDCLVKLLKGLCLKYLGRIQEAE
ENFRSISANEKKIKYDHYLIPNALLELALLFMEQGRNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQ
ARSSLEDGNRSLVSSVSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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