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Report for CCDS50961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50961.1 Public Mus musculus 3 Efna1 23 108 98 CCDS HistoryNCBI Gene:13636Re-query CCDS DB by CCDS ID:50961.1Re-query CCDS DB by GeneID:13636See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118587.7 ENSMUSP00000112904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118587.7Link to Ensembl Protein Viewer:ENSMUSP00000112904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118587Re-query CCDS DB by Protein ID:ENSMUSP00000112904
Original member Current member NCBI NM_001162425.1 NP_001155897.1 Accepted alive Link to Nucleotide Sequence:NM_001162425.1Link to Protein Sequence:NP_001155897.1Re-query CCDS DB by Nucleotide ID:NM_001162425Re-query CCDS DB by Protein ID:NP_001155897Link to BLAST:NP_001155897.1

Chromosomal Locations for CCDS 50961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89272492 89272604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89272772 89272822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89272957 89273022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89276130 89276328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGAGCGATACACACTGTACATGGTGGAACACCAGGAGTATGTGGCATGCCAACCCCAGTCCAAGGACC
AGGTCCGTTGGAATTGCAACCGGCCCAGTGCCAAGCATGGCCCGGAGAAGCTGTCTGAGAAATTCCAGCG
CTTCACGCCTTTTATCTTGGGCAAGGAGTTCAAGGAAGGACACAGCTACTACTACATCTCCAAACCTATC
TACCATCAGGAATCCCAGTGCTTGAAGCTGAAGGTGACTGTCAATGGCAAAATCACTCATAATCCCCAGG
CCCATGTCAACCCACAGGAGAAGAGACTCCAAGCAGATGACCCGGAAGTACAGGTTTTGCACAGCATTGG
TTACAGTGCCGCCCCCCGCCTCTTCCCACTGGTCTGGGCAGTATTGCTCCTACCACTGCTGCTGCTGCAA
TCTCAGTGA

Translation (142 aa):
MERYTLYMVEHQEYVACQPQSKDQVRWNCNRPSAKHGPEKLSEKFQRFTPFILGKEFKEGHSYYYISKPI
YHQESQCLKLKVTVNGKITHNPQAHVNPQEKRLQADDPEVQVLHSIGYSAAPRLFPLVWAVLLLPLLLLQ
SQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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