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Report for CCDS50919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50919.1 Reviewed, update pending Mus musculus 3 Vmn2r2 23 108 98 CCDS HistoryNCBI Gene:100125586Re-query CCDS DB by CCDS ID:50919.1Re-query CCDS DB by GeneID:100125586See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 50919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077958.4 ENSMUSP00000077109.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077958.4Link to Ensembl Protein Viewer:ENSMUSP00000077109.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077958Re-query CCDS DB by Protein ID:ENSMUSP00000077109
Original member NCBI NM_001104592.1 NP_001098062.1 Removed not alive Link to Nucleotide Sequence:NM_001104592.1Link to Protein Sequence:NP_001098062.1Re-query CCDS DB by Nucleotide ID:NM_001104592Re-query CCDS DB by Protein ID:NP_001098062Link to BLAST:NP_001098062.1
Current member NCBI NM_001385025.1 NP_001371954.1 Pending alive Link to Nucleotide Sequence:NM_001385025.1Link to Protein Sequence:NP_001371954.1Re-query CCDS DB by Nucleotide ID:NM_001385025Re-query CCDS DB by Protein ID:NP_001371954Link to BLAST:NP_001371954.1

Chromosomal Locations for CCDS 50919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 64116432 64117414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64118756 64118879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64126480 64126710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64133904 64134773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64137205 64137471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGAAAACCATGATCCACACCATCAAGGAGATTAATGAGAGGAAGGATATTTTGCCCAACCACACTCTGG
GCTACCAGATCTTCGACACCTGTTTCTCTGTCTCCAAAGCAATGGAGACTGCTTTAGCATTTCTTACAGG
ACAGGAAGAAAACAAGCCCAATTTTAGAAACAGCACTGGGAAATATCTCGTAGGAATTATTGGAGCAGGA
GGCTCCTCCTTGTCCGTTGCTGCTGCAAGAATTCTGGGGTTGTATTACATTCCTCAGGTGGGCTATACTT
CTTCCTGTGCAGTTCTTAGTGACACATTCCAGTTTCCATCTTTTTATCGCTCAACACCCAGTGATAAATT
TCAGTCTGAGGGCATGGTGAGTCTTATCCAACACTTTGGTTGGGTCTGGGTAGGTACTATTGCATCTGAT
GATGATTATGGAAAATATGGAGTAAAATCCCTTAGGGAAAGAATGGAGTTTGTCAACCTCTGTGTTGCTT
TCTCTGAAACCATTCCAAAAGTCTACTCCAATGAGAAAATGCAAAAAGCTATTAAGGCAATAAAAAGTTC
CACTGCCAAAGTCATTGTGCTTTTTTCAACTGACATTGACCTCGGCCCATTTGTGCTGGAAGTGATTCAT
CATAACATAACTGACAGGACATGGATAGCCAGTGAAGCCTGGATTACCTCTGCTCTCATTGCAAAGCCTG
AGTATTTCCCCTATTTTGGTGGAACTATTGGATTTGCAATACCAAGAAGTGTTATACCAGGACTAAAGGA
ATTCCTTTATGATGTACACCCTAGCAAGAATCCAAATGATGTCTTGACCATTGAATTCTGGCAAACTGCT
TTTAACTGTACCTGGCCCAACAGCAGTGTGCCTTACAATGTGGACCACAGAGTGAATATGACTGGTAAAG
AAGACAGACTGTATGACATGTCTGATCAGCTCTGCACTGGAGAGGAGAAGCTGGAAGATCTTAAAAACAC
CTATCTGGATACGTCTCAGCTAAGAATCACAAACAATGTCAAACAAGCTGTGTATCTTATGGCTTATGCC
CTGGATCGTTTAAGCACTTGTGACTTATTGGAAGAACAGAGGAATGATACAGCATGTTCACATATACCTG
ACTTTGAGCCCAAAGAGCTAATGACTTACTTTAAGAAGTTGAAAATTATTACACATGATGGAGCAGAAAT
AGAACTTGATTTGAATGGAGATGTAGGCAAGGGATATTATGATATCCTCAATTGGCACATGGGTAATACT
GGAGAAATCACCTTTGTCAAGGTTGGAGAATACAAATACACATCCACAAAATCTGAACTTGTTCTTCCAA
AGAACTCATCATTGTTTTGGAACACTGAATCTTCAATGCTTCCAGAGTCAGTCTGCACAAAACTGTGTGC
TCCAGGGACCCGAAGGGGGATTCGACAGGGACAACCTGTATGCTGCTTTAATTGTATCCCATGTGCTGAT
GGATATGTGTCAGAGAAATCAGGACAAAGAGAATGTGATCCATGCGGTGAAGATGACTGGTCCAATGCAG
AGAAGAGCAAGTGTGTGCCAAAGCTTGTGGAATTCCTTGCTTATGGAGAGGCACTGGGGTTCACTCTTGT
CATCTTGTCCATCTTTGGGGCACTTGTGGTCTTGGCAGTAACTGTTGTGTATGTAATCCACAGACACACT
CCATTGGTGAAAGCCAATGACCGGGAGCTGAGCTTCCTCATTCAGATGTCACTGGTCATCACTGTGCTGT
CTTCCTTGCTGTTCATAGGCAAGCCATGCAACTGGTCCTGCATGGCCCGCCAGATCACTCTGGCACTCGG
CTTTTGCCTTTGTCTGTCTTCCATTCTTGGAAAGACTATTTCACTCTTTTTTGCCTATAGGATTTCTGTA
TCTAAAACCCGTCTTATATCCATGCACCCCATTTTTCGAAAACTAATTGTACTGGTCTGCGTTGTAGGAG
AGATTGGTGTATGTGCAGCATACTTGGTGTTGGAGCCTCCAAGAATGTTCAAGAACATTGAAATTCAAAA
TGTAAAGATCATCTTTGAATGCAATGAAGGTTCTGTAGAGTTTCTGTGCTCCATATTTGGGTTTGATGTT
CTCCTGGCTCTGCTGTGTTTTCTTACAACTTTTGTGGCTCGCCAGCTGCCAGATAACTATTATGAAGGGA
AATGTATCACTTTTGGAATGCTGGTCTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTTACTTGAGCAC
CAAAGGCAAATTCAAAGTGGCTGTGGAAATATTTGCCATTTTGGCATCTAGCTATGGCTTGTTAGGCTGT
CTATTTCTTCCCAAGTGCTTCATTATCTTGCTGAGGCCAAAGAGGAACACTGATGAAACTGTTGGTGGAA
GAGTCCCCACTGTTGACAGGAGCATCCAGCTGACCTCAGCTTCTGTGAGCAGTGAGCTTAACAGCACCAC
AGTGTCCACTGTTCTGGATGAGTAG

Translation (824 aa):
MKTMIHTIKEINERKDILPNHTLGYQIFDTCFSVSKAMETALAFLTGQEENKPNFRNSTGKYLVGIIGAG
GSSLSVAAARILGLYYIPQVGYTSSCAVLSDTFQFPSFYRSTPSDKFQSEGMVSLIQHFGWVWVGTIASD
DDYGKYGVKSLRERMEFVNLCVAFSETIPKVYSNEKMQKAIKAIKSSTAKVIVLFSTDIDLGPFVLEVIH
HNITDRTWIASEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKNPNDVLTIEFWQTA
FNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDQLCTGEEKLEDLKNTYLDTSQLRITNNVKQAVYLMAYA
LDRLSTCDLLEEQRNDTACSHIPDFEPKELMTYFKKLKIITHDGAEIELDLNGDVGKGYYDILNWHMGNT
GEITFVKVGEYKYTSTKSELVLPKNSSLFWNTESSMLPESVCTKLCAPGTRRGIRQGQPVCCFNCIPCAD
GYVSEKSGQRECDPCGEDDWSNAEKSKCVPKLVEFLAYGEALGFTLVILSIFGALVVLAVTVVYVIHRHT
PLVKANDRELSFLIQMSLVITVLSSLLFIGKPCNWSCMARQITLALGFCLCLSSILGKTISLFFAYRISV
SKTRLISMHPIFRKLIVLVCVVGEIGVCAAYLVLEPPRMFKNIEIQNVKIIFECNEGSVEFLCSIFGFDV
LLALLCFLTTFVARQLPDNYYEGKCITFGMLVFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGC
LFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTTVSTVLDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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