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Report for CCDS50912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50912.1 Public Mus musculus 3 Wwtr1 23 108 98 CCDS HistoryNCBI Gene:97064Re-query CCDS DB by CCDS ID:50912.1Re-query CCDS DB by GeneID:97064See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120977.1 ENSMUSP00000113040.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120977.1Link to Ensembl Protein Viewer:ENSMUSP00000113040.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120977Re-query CCDS DB by Protein ID:ENSMUSP00000113040
Original member Current member NCBI NM_001168281.1 NP_001161753.1 Accepted alive Link to Nucleotide Sequence:NM_001168281.1Link to Protein Sequence:NP_001161753.1Re-query CCDS DB by Nucleotide ID:NM_001168281Re-query CCDS DB by Protein ID:NP_001161753Link to BLAST:NP_001161753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161753.1 452 Q9EPK5-2 452 100% 0 0

Chromosomal Locations for CCDS 50912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57458926 57459110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57462519 57462631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57463443 57463564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57477357 57477556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57501732 57501868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57574823 57575257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57575714 57575880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGCATAATTCAACAGCTCCACTTTCGGCCCGCCTCTTTCCTAAGGGTGGGAGTTTGCTTCAAACTTTGT
TTATGGGACAGTCCGGGAGCCGCGGCGGCTGCGCTCGTCTACGTCTTCTCTGTCGCCTCCTCGCGCAGTG
GGAGCGCCCGAGGCCGGTTCCGGGGATAAAGATGAATCCGTCCTCGGTGCCCCATCCGCTCCCGCCGCCA
GGGCAGCAAGTCATCCACGTCACGCAGGACCTGGACACCGACCTCGAAGCCCTCTTCAACTCTGTCATGA
ACCCCAAGCCCAGCTCATGGCGGAAAAAGATCCTCCCGGAGTCCTTCTTTAAGGAGCCCGATTCCGGCTC
GCACTCGCGCCAATCCAGCACAGACTCATCAGGCGGCCACCCGGGGCCTCGACTAGCTGGCGGCGCGCAG
CACGTCCGCTCGCACTCGTCGCCCGCATCCCTGCAGCTGGGCACCGGTGCGGGAGCCGCTGGAGGCCCTG
CACAGCAGCATGCACATCTCCGCCAGCAGTCCTATGACGTGACCGACGAGCTGCCGTTGCCCCCCGGGTG
GGAGATGACCTTCACGGCCACTGGCCAGAGATACTTCCTTAATCACATAGAGAAAATCACCACATGGCAA
GACCCCAGGAAGGTGATGAATCAGCCTCTGAATCATGTGAACCTCCACCCGTCCATCACTTCCACCTCGG
TGCCACAGAGGTCCATGGCAGTGTCCCAGCCGAATCTCGCAATGAATCACCAACACCAGCAAGTCGTGGC
CACTAGCCTGAGTCCACAGAACCACCCGACTCAGAACCAACCCACAGGGCTCATGAGTGTGCCCAATGCA
CTGACCACTCAGCAGCAGCAGCAGCAGAAACTGCGGCTTCAGAGGATCCAGATGGAGAGAGAGAGGATTA
GGATGCGTCAAGAGGAGCTCATGAGGCAGGAAGCTGCCCTCTGCCGACAGCTCCCCATGGAAACCGAGAC
CATGGCCCCTGTCAACACGCCTGCCATGAGCACAGATATGAGATCTGTCACCAACAGTAGCTCAGATCCT
TTCCTCAATGGAGGGCCCTATCATTCACGGGAGCAGAGCACAGACAGTGGCCTGGGGTTAGGGTGCTACA
GTGTCCCCACAACTCCAGAAGACTTCCTCAGCAACATGGACGAGATGGATACAGGTGAAAATTCCGGTCA
GACACCCATGACCGTCAATCCCCAGCAGACCCGCTTCCCTGATTTCCTGGACTGCCTTCCAGGAACAAAT
GTTGACCTCGGGACTTTGGAGTCTGAAGATCTGATCCCTCTCTTCAATGATGTAGAGTCTGCTCTGAACA
AAAGCGAGCCCTTTCTAACCTGGCTGTAA

Translation (452 aa):
MHNSTAPLSARLFPKGGSLLQTLFMGQSGSRGGCARLRLLCRLLAQWERPRPVPGIKMNPSSVPHPLPPP
GQQVIHVTQDLDTDLEALFNSVMNPKPSSWRKKILPESFFKEPDSGSHSRQSSTDSSGGHPGPRLAGGAQ
HVRSHSSPASLQLGTGAGAAGGPAQQHAHLRQQSYDVTDELPLPPGWEMTFTATGQRYFLNHIEKITTWQ
DPRKVMNQPLNHVNLHPSITSTSVPQRSMAVSQPNLAMNHQHQQVVATSLSPQNHPTQNQPTGLMSVPNA
LTTQQQQQQKLRLQRIQMERERIRMRQEELMRQEAALCRQLPMETETMAPVNTPAMSTDMRSVTNSSSDP
FLNGGPYHSREQSTDSGLGLGCYSVPTTPEDFLSNMDEMDTGENSGQTPMTVNPQQTRFPDFLDCLPGTN
VDLGTLESEDLIPLFNDVESALNKSEPFLTWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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