NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50548.1 Public Mus musculus 2 Ralgds 23 108 98 CCDS HistoryNCBI Gene:19730Re-query CCDS DB by CCDS ID:50548.1Re-query CCDS DB by GeneID:19730See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113893.7 ENSMUSP00000109526.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113893.7Link to Ensembl Protein Viewer:ENSMUSP00000109526.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113893Re-query CCDS DB by Protein ID:ENSMUSP00000109526
Original member NCBI NM_001145836.1 NP_001139308.1 Updated not alive Link to Nucleotide Sequence:NM_001145836.1Link to Protein Sequence:NP_001139308.1Re-query CCDS DB by Nucleotide ID:NM_001145836Re-query CCDS DB by Protein ID:NP_001139308
Current member NCBI NM_001145836.2 NP_001139308.1 Accepted alive Link to Nucleotide Sequence:NM_001145836.2Link to Protein Sequence:NP_001139308.1Re-query CCDS DB by Nucleotide ID:NM_001145836Re-query CCDS DB by Protein ID:NP_001139308Link to BLAST:NP_001139308.1

Chromosomal Locations for CCDS 50548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28533551 28533733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28540711 28540821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28542290 28542483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28542891 28542950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28543554 28543747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28543989 28544386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28545010 28545225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28545415 28545518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28545861 28545945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28547152 28547220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28547534 28547620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28548113 28548145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28548384 28548505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28548670 28548765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28548955 28549156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28549290 28549532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28550449 28550563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28552092 28552267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2688 nt):
ATGGTGCAGCGCATGTGGGCTGAGGCGGCCGGGCCCATAGGGGGCACCGAGCCGTTGTTTCCCGGTTCCC
GG
CGCAGCCGCAGCGTGTGGGACGCCGTGCGCCTGGAGGTGGGCGTCCCCGACAGCTGCCCAGTGGTGCT
G
CACAGCTTCACGCAGCTCGACCCTGATCTGCCGCGCCTGGAGAGCTCCACGCAGGAGATTGGGGAGGAG
CTG
ATCAACGGGGTCATCTACTCCATCTCCCTGCGCAAGGTCCAGCTACACCAAGGAGCCACTAAGGGCC
AG
CGCTGGCTAGGGTGTGAGAACGAGTCGGCTCTGAACCTCTATGAGACCTGCAAGGTGCGCACGGTGAA
G
GCTGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTC
ACT
GTCTTCCTGTGCACCTACAGAGCCTTCACTACCACCCAGCAGGTGCTAGACCTGCTGTTCAAAAGAT
AT
GGCTGCATCCTCCCCTACTCCAGTGAGGACGGCGGACCGCAGGACCAACTCAAAAATGCCATCTCCTC
C
ATCCTGGGCACCTGGCTGGACCAATACTCAGAGGATTTCTGTCAACCTCCGGACTTTCCCTGCCTCAAG
CAG
CTGGTGGCTTATGTACAGCTCAACATGCCTGGCTCAGATCTGGAGCGCCGCGCTCACCTTCTCCTGG
CC
CAGCTGGAGGACCTGGAGCCCAGTGAGGCTGAGTCTGAGGCCCTGTCCCCAGCTCCAGTGCTGTCTCT
G
AAGCCAGCTTCACAGCTAGAACCTGCACTGCTGCTGACGCCCAGCCAAGTGGTGACATCAACTCCAGTA
CGA
GAGCCCGCTGCGGCCCCAGTGCCAGTGCTGGCCTCCAGCCCAGTGGTGGCACCAGCTCCTGAGCTAG
AA
CCAGTTCCAGAGCCACCTCAAGAGCCTGAGCCATCCCTAGCACTGGCTCCAGAGCTGGAGCCCGCCGT
C
TCACAGAGCCTGGAACTGGAGTCAGCTCCTGTGCCCACTCCTGCCTTAGAGCCTTCCTGGTCTCTGCCT
GAA
GCCACGGAGAATGGACTAACCGAGAAGCCTCACCTTCTGCTGTTCCCTCCTGACTTGGTGGCTGAAC
AG
TTTACTCTGATGGATGCAGAACTATTCAAGAAAGTCGTGCCCTACCACTGCCTGGGCTCCATCTGGTC
C
CAACGGGACAAGAAGGGCAAGGAGCACCTCGCGCCTACCATCCGCGCCACTGTCGCCCAGTTCAACAAC
GTG
GCCAACTGTGTCATTACTACCTGCCTTGGGGACCAGAGTATGAAGGCTCCGGACAGGGCCCGGGTGG
TG
GAACACTGGATCGAGGTGGCCAGGGAGTGCAGAGCGCTCAAGAATTTCTCCTCCCTCTACGCCATCCT
C
TCTGCTCTACAGAGCAATGCCATCCACCGCCTAAAGAAGACGTGGGAAGAGGTCTCCAGGGACAGCTTT
CGA
GTGTTCCAGAAACTGTCGGAGATCTTCTCTGATGAGAACAACTACTCCCTGAGCAGAGAGCTGCTCA
TC
AAGGAAGGAACCTCCAAGTTTGCCACACTGGAGATGAACCCTAGGAGAGCCCAGAGGCGGCAGAAGGA
G
ACAGGAGTCATCCAGGGCACCGTTCCCTACCTGGGCACATTCCTCACTGACCTGGTGATGCTGGACACT
GCC
ATGAAGGACTATCTCTATGGGAGACTGATCAACTTTGAAAAGAGAAGGAAGGAGTTCGAAGTCATTG
CC
CAGATCAAGTTGCTACAGTCAGCCTGCAACAACTACAGCATTGCTCCGGAAGAACACTTTGGAACATG
G
TTCCGAGCTATGGAGCGACTCAGTGAGGCTGAGAGCTACACCCTGTCGTGTGAGCTGGAGCCCCCGTCT
GAG
TCGGCCAGCAACACCCTGAGGAGCAAGAAAAGCACAGCCATTGTCAAGCGCTGGAGCGACCGCCAGG
CT
CCCAGCACGGAGCTCAGCACCAGTAGCAGTGCCCACTCCAAGTCCTGTGACCAGCTTCGGTGCAGCCC
T
TACCTCGGCAGCGGGGACATCACCGACGCGCTCAGTGTGCACTCAGCTGGCTCTTCCAGCTCTGATGTG
GAG
GAGATCAACATGAGCTTCGTCCCAGAGTCTCCTGATGGCCAGGAAAAGAAGTTCTGGGAGTCAGCCT
CC
CAGTCGTCCCCAGAGACCTCTGGCATCAGCTCCGCCTCCAGCAGCACCTCCTCTTCGTCAGCCTCCAC
C
ACGCCCGTGTCTACCACGCGCACCCACAAGCGCTCCGTCTCAGGGGTCTGCAGCTACAGCTCCTCACTG
CCT
CTCTACAACCAGCAGGTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACA
TG
TACAAGAGCATCCTGGTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGAAAAGCCATGGACAAACA
C
AACCTAGATGAGGACGAGCCGGAGGATTATGAGCTGGTGCAGATCATCTCAGAGGATCACAAGCTGAAG
ATT
CCAGAAAACGCCAATGTGTTCTATGCCATGAACTCTACCGCCAACTATGACTTCATCCTAAAGAAGC
GG
ACCTTCACTAAGGGGGCTAAAGTCAAGCATGGAGCCAGCTCCACCCTCCCTCGTATGAAGCAGAAGGG
A
CTCAGGATTGCCAAAGGCATCTTCTAA


Translation (895 aa):
MVQRMWAEAAGPIGGTEPLFPGSRRSRSVWDAVRLEVGVPDSCPVVLHSFTQLDPDLPRLESSTQEIGEE
L
INGVIYSISLRKVQLHQGATKGQRWLG
CENESALNLYETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYV
T
VFLCTYRAFTTTQQVLDLLFK
RYGCILPYSSEDGGPQDQLKNAISSILGTWLDQYSEDFCQPPDFPCLK
Q
LVAYVQLNMPGSDLERRAHLLLAQLEDLEPSEAESE
ALSPAPVLSLKPASQLEPALLLTPSQVVTSTPV
R
EPAAAPVPVLASSPVVAPAPELEPVPEPPQEPEPSLALAPELEPAVSQSLELESAPVPTPALEPSWSLP
E
ATENGLTEKPHLLLFPPDLVAEQFTLMDA
ELFKKVVPYHCLGSIWSQRDKKGKEHLAPTIRATVAQFNN
V
ANCVITTCLGDQSMKAPDRARVVEHWIEVAR
ECRALKNFSSLYAILSALQSNAIHRLKKTWEEVSRDSF
R
VFQKLSEIFSDENNYSLSRELLIK
EGTSKFATLEMNPRRAQRRQKETGVIQGTVPYLGTFLTDLVMLDT
A
MKDYLY
GRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEHFGTWFRAMERLSEAESYTLSCELEPPS
E
SASNTLRSKKSTAIVKRWS
DRQAPSTELSTSSSAHSKSCDQLRCSPYLGSGDITDALSVHSAGSSSSDV
E
EINMSFVPESPDGQEKK
FWESASQSSPETSGISSASSSTSSSSASTTPVSTTRTHKRSVSGVCSYSSSL
P
LYNQQVGDCCIIRVSLDVDNGNMYKSIL
VTSQDKAPTVIRKAMDKHNLDEDEPEDYELVQIISEDHKLK
I
PENANVFYAMNSTANYDFILKKRTFTKGAKVKHGASSTLPRMKQKGLRIAKGIF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser