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Report for CCDS50375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50375.1 Public Mus musculus 19 Trpt1 23 108 98 CCDS HistoryNCBI Gene:107328Re-query CCDS DB by CCDS ID:50375.1Re-query CCDS DB by GeneID:107328See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088223.6 ENSMUSP00000085555.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088223.6Link to Ensembl Protein Viewer:ENSMUSP00000085555.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088223Re-query CCDS DB by Protein ID:ENSMUSP00000085555
Original member Current member NCBI NM_153597.2 NP_705825.2 Accepted alive Link to Nucleotide Sequence:NM_153597.2Link to Protein Sequence:NP_705825.2Re-query CCDS DB by Nucleotide ID:NM_153597Re-query CCDS DB by Protein ID:NP_705825Link to BLAST:NP_705825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705825.2 249 Q8K3A2 249 100% 0 0

Chromosomal Locations for CCDS 50375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6996465 6996524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6996696 6996777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6997933 6998102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6998192 6998366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6998509 6998565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6998658 6998768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6998892 6998986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGAACGCCCCTGGAGGAAGGAGGAAGGAAGGTAGAAGGACTCATAGACCCCGGGAACAGGACCGAAATG
TGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGC
TGATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTG
CAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCC
TCATCAGGGCCAATCAGGGCCACTCCCTACAAGTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACA
AGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTG
TCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCGGCA
TTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAGATGGAATCCCTTTCTT
CTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAG
GAGGCCCTGCAGCTTCGACCTACACGAAAGCCTCTCTCCTTGGCTGGTGATAAAGAGACAGAGACTCAGA
GTGGCCCCAAGCTCAGTTCCAGAGGAGGAAGAAGAAAGATCCAACAATAA

Translation (249 aa):
MNAPGGRRKEGRRTHRPREQDRNVQLSKALSYALRHGALKLGLPMRADGFVPLQALLQLPQFHSFSIEDV
QLVVNTNEKQRFTLQPGEPSTGLLIRANQGHSLQVPELELTPLETPQALPLTLVHGTFWKHWPSILLKGL
SRQGRTHIHLASGLPGDPGVISGIRPNCEVAVFIDGPLALTDGIPFFCSANGVILTPGNAEGFLLPKYFK
EALQLRPTRKPLSLAGDKETETQSGPKLSSRGGRRKIQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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