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Report for CCDS50354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50354.1 Public Mus musculus 19 Slc29a2 23 108 98 CCDS HistoryNCBI Gene:13340Re-query CCDS DB by CCDS ID:50354.1Re-query CCDS DB by GeneID:13340See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236152.1 ENSMUSP00000157780.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236152.1Link to Ensembl Protein Viewer:ENSMUSP00000157780.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236152Re-query CCDS DB by Protein ID:ENSMUSP00000157780
Original member Current member NCBI NM_007854.3 NP_031880.2 Accepted alive Link to Nucleotide Sequence:NM_007854.3Link to Protein Sequence:NP_031880.2Re-query CCDS DB by Nucleotide ID:NM_007854Re-query CCDS DB by Protein ID:NP_031880Link to BLAST:NP_031880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031880.2 456 Q61672 456 100% 0 0

Chromosomal Locations for CCDS 50354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5024249 5024277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5024511 5024592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5026028 5026188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5026358 5026497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5027025 5027159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5027343 5027440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5027680 5027764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5028841 5028971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5029212 5029320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5029409 5029494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5030288 5030490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5031002 5031113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCGCGGGGAAACGCCCCTCGGGACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGG
GCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCGTACTTCCAGGGGCGGTTAGCAGGGACCAA
CAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTG
ACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTGCATCCCCG
AGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAA
GGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATTCCTTCTGT
GCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCA
GTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCAGTGGCGTGGATGC
CCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTC
AGCCTGCCTCATCTGAAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGC
TGGAGACTAAAGCTGAGCTCCTCCAAGCTGATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAG
CCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCA
GTCTTTGTTGTCTTCCGGAAGATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGT
CGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGGGTCTGTTCTT
CAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTC
CTGTGGCCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCAC
TCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCAT
CACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAGG
CAGGTGTTGCCACATGAGAGGGAGGTAGCCGGAGCCCTCATGACCTTCTTCCTGGCCCTGGGACTCTCCT
GCGGAGCCTCCCTCTCCTTCCTCTTCAAGGCTTTACTCTGA

Translation (456 aa):
MARGNAPRDSYHLVGISFFILGLGTLLPWNFFITAIPYFQGRLAGTNSSAETMGTNHTSPTDTFNFNNWV
TLLSQLPLLLFTLLNSFLYQCIPESVRILGSLLAILLLFALTAALVKVDLSPGLFFSVTMASVWFINSFC
AVLQGSLFGQLGTMPSTYSTLFLSGQGLAGIFAALAMLMSLASGVDAQTSALGYFITPCVGILLSIVCYL
SLPHLKFARYYLTEKLSQAPTQELETKAELLQADEKNGVPISPQQASPTLDLDPEKEPEPEEPQKPGKPS
VFVVFRKIWLTALCLVLVFTVTLSVFPAITAMVTTSSNSPGKWGLFFNPICCFLLFNVMDWLGRSLTSYF
LWPDEDSQQLLPLLVCLRFLFVPLFMLCHVPQHARLPIIFRQDAYFITFMLLFAVSNGYLVSLTMCLAPR
QVLPHEREVAGALMTFFLALGLSCGASLSFLFKALL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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