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Report for CCDS50318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50318.1 Public Mus musculus 18 Mex3c 23 108 98 CCDS HistoryNCBI Gene:240396Re-query CCDS DB by CCDS ID:50318.1Re-query CCDS DB by GeneID:240396See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091852.4 ENSMUSP00000089463.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091852.4Link to Ensembl Protein Viewer:ENSMUSP00000089463.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091852Re-query CCDS DB by Protein ID:ENSMUSP00000089463
Original member Current member NCBI NM_001039214.4 NP_001034303.3 Accepted alive Link to Nucleotide Sequence:NM_001039214.4Link to Protein Sequence:NP_001034303.3Re-query CCDS DB by Nucleotide ID:NM_001039214Re-query CCDS DB by Protein ID:NP_001034303Link to BLAST:NP_001034303.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034303.3 652 Q05A36 652 100% 0 0

Chromosomal Locations for CCDS 50318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73573044 73573776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73589571 73590796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGCCAAGCGGCAGCTCCGCGGCCCTGGCCCTGGCCCTGGCGGCGGCCCCGGCCCCCCTGCCGCAGCCGC
CTCCGCTGCCGCCGCCGCCGCCCGCGGGAGGCCCAGAGCTCGAAGGGGACGGGCTGCTGCTGAGGGAGCG
CCTGGCCGCGCTAGGCCTCGACGACCCCAGCCCGGCGGAGCCCGGCGCCCCGGCGCTCAGGGCCGCGGCG
GTGGCGGCGGCGGCGGCGGCGCAGTGCCAGGCCCGGCGGGCGACCGGGCTGGCTCCGGAGGAGCCTGGCC
GCCTCGCGACCTCCGAGACGGCGGAGCTGGAGCTGGAGGTGGACGAAGAGGAGGGGGAGGAAGCGGAGCT
GGACGGAGAACTGCTGGAGGAGGAGGAGCTGGAGGAGGCAGAGGAGGAGGACCGGCCGTCGCTGCTGCTG
TTGTCGCCGCCCGCGGCCACCGCCTCCCAGACTCAGCCGATCCCGGGCGGGCCCCTGGGGTCGGTGCTGC
TGCCGGCCGCGGGCTTCGATGCCCGGGAGGCCGCGGCGGCAGGGGTGCTGTACGGAGGGGACGATGCCCA
GGGCATGATGGCGGCGATGCTGTCCCACGCCTACGGCCCCGGCGGCGGCGGGGCCGCCGCTGCCGCCCTG
AACGGAGAGCAAGCGGCCCTGCTGAGAAGGAAGAGCGTCAACACCACCGAGTGCGTCCCCGTGCCCAGTT
CCGAGCATGTCGCTGAGATTGTCGGACGCCAGGGTTGTAAAATTAAAGCACTGAGAGCCAAGACAAACAC
GTATATCAAGACACCTGTTCGTGGTGAAGAACCCATTTTTGTTGTCACTGGACGGAAAGAAGATGTTGCC
ATGGCCAAAAGAGAAATCCTCTCGGCTGCAGAGCACTTTTCTATGATTCGTGCATCTCGAAACAAAAATG
GTCCTGCACTAGGAGGGTTATCGTGTAGTCCTAATCTGCCTGGTCAAACCACAGTCCAAGTCAGGGTCCC
CTATCGTGTGGTAGGGCTAGTGGTTGGACCAAAAGGAGCAACAATTAAGAGAATTCAGCAACAGACCCAC
ACGTACATAGTTACTCCGAGCAGAGATAAGGAGCCAGTCTTTGAAGTCACAGGGATGCCCGAAAATGTTG
ATCGAGCACGAGAAGAGATAGAAATGCATATCGCCATGCGTACCGGAAACTACATAGAGCTCAATGAAGA
AAATGATTTCCATTATAACGGTACCGATGTGAGCTTTGAAGGTGGCACTCTTGGCTCTGCATGGCTCTCT
TCCAATCCAGTTCCTCCAAGCCGAGCAAGAATGATGTCTAACTATCGCAATGATAGTTCTAGCTCTCTAG
GAAGTGGCTCCACTGATTCCTATTTTGGGAGCAATAGGCTAGCTGACTTTAGTCCAACAAGCCCATTTAG
CACAGGGAACTTTTGGTTTGGAGATACACTACCATCTGTAGGCTCAGAAGATCTTACAGTAGACTCTCCT
GCCTTTGACTCTTTACCAACATCTGCTCAAACTATCTGGACTCCATTTGAACCAGTTAACCCACTCTCTG
GCTTTGGGAGTGATCCTTCTGGTAACATGAAGACTCAGCGTAGAGGAAGTCAGCCATCAACTCCTCGTCT
GTCTCCTACATTTCCTGAGAGCATAGAACACCCACTTGCTCGAAGGGTGAGGAGTGACCCACCTAGTACA
GGCAACCATGTTGGCCTTCCAATATACATCCCTGCTTTTTCTAATGGTACCAATAGTTACTCCTCTTCCA
ATGGTGGTTCCACCTCTAGCTCACCTCCAGAATCAAGAAGAAAGCACGACTGTGTGATTTGCTTTGAGAA
TGAAGTTATTGCTGCCCTAGTTCCATGTGGCCACAACCTCTTCTGCATGGAATGTGCCAACAAGATCTGT
GAAAAGAGAACGCCGTCATGTCCAGTTTGCCAGACAGCTGTTACTCAGGCAATCCAAATTCACTCTTAA

Translation (652 aa):
MPSGSSAALALALAAAPAPLPQPPPLPPPPPAGGPELEGDGLLLRERLAALGLDDPSPAEPGAPALRAAA
VAAAAAAQCQARRATGLAPEEPGRLATSETAELELEVDEEEGEEAELDGELLEEEELEEAEEEDRPSLLL
LSPPAATASQTQPIPGGPLGSVLLPAAGFDAREAAAAGVLYGGDDAQGMMAAMLSHAYGPGGGGAAAAAL
NGEQAALLRRKSVNTTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVA
MAKREILSAAEHFSMIRASRNKNGPALGGLSCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTH
TYIVTPSRDKEPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEENDFHYNGTDVSFEGGTLGSAWLS
SNPVPPSRARMMSNYRNDSSSSLGSGSTDSYFGSNRLADFSPTSPFSTGNFWFGDTLPSVGSEDLTVDSP
AFDSLPTSAQTIWTPFEPVNPLSGFGSDPSGNMKTQRRGSQPSTPRLSPTFPESIEHPLARRVRSDPPST
GNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKIC
EKRTPSCPVCQTAVTQAIQIHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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