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Report for CCDS50147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50147.1 Public Mus musculus 17 Pot1b 23 108 98 CCDS HistoryNCBI Gene:72836Re-query CCDS DB by CCDS ID:50147.1Re-query CCDS DB by GeneID:72836See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086876.6 ENSMUSP00000084089.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086876.6Link to Ensembl Protein Viewer:ENSMUSP00000084089.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086876Re-query CCDS DB by Protein ID:ENSMUSP00000084089
Original member Current member NCBI NM_028370.2 NP_082646.1 Accepted alive Link to Nucleotide Sequence:NM_028370.2Link to Protein Sequence:NP_082646.1Re-query CCDS DB by Nucleotide ID:NM_028370Re-query CCDS DB by Protein ID:NP_082646Link to BLAST:NP_082646.1

Chromosomal Locations for CCDS 50147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55653406 55653518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55654767 55654872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55662463 55662554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55664317 55664405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55665648 55665783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55666412 55666617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55669740 55669896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55672831 55672893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55674052 55674140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55687789 55687958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55692722 55692877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55695027 55695317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55698457 55698587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55699992 55700106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55706106 55706114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGTCTTCGGCCCCAGTAGCACCTTCTACATACACACCCCTAAATCTACTTAAGGAAGGCACTGTTGTCA
ATGTCTGTGGTGTTGTGAAGTTCTTTAAGCCTCCGTACTTAAGCAAAGGAACAGATTATTGCTCTGTTGT
CACGATTGTGGACCAGACAAATGTGAAGTTAACATGCATGCTCTTTAGTAGAGACTACGATACCCTTCCC
AGCGTTTATAAAGTTGGAGACATCGTTTGCTTCCAAGGGCTGAAGATCCAAGCATATAAAAATGAGCTTC
AGGCAATCAGCAAGTTTGGTTTTGCATCTTTGACATTTGATGGCACCTTAGGGGCTCCTATCATACTGCG
TACTTTAAGCAAGAGATTTAACTTCACTGCTCAGGACTACAGTATGGTAGAAGCCTTGCGAACGTGGGCA
TCCACACACATTTCAGCTTCTTCCAACTTAGTGCAGCTTTCTGATGCTCAGCCCATGCAGTATTACGACC
TGACCTGTCAGCTCCTGGGCAAAGCACAAGTGGATGGAGTGTCATTTCTCCTAAAGGTATGGGATGGCAC
CAGGACAAAGATTCCCTCTTGGAGAGTCTGCATACAAGACGTTGCTTTTGAAGGTGACTTAAGTCACATT
CTGCAGCTACAGAATCTGGTGGTAGACATTGTCGTTTATGATAATCATGTCCAAGTGGCAAAATCCCTAA
AGATCGGAAGCTTTCTTAGAATCTATAGTCTCCATACCAAACTTCAGCCAATTAATTCAGAGTCCACAAC
TTCCTTGGTAAGACTCGAATTTCATCTTCATGGAGGAACTAGTTATGGTCGTGGGATCAGAGTCTTACCA
GAAAGTAACTATGATGTGGATCAGCTGAAAAAAGCTTTAGAATCTGTAGACTTGGAAGCCATTCAGACCT
CAGATGACACCTACCAATCCGACAATGTGGAGAATTGTTTAACATCTTCAAGCTCCGAATCAGACCTAGT
TTCCCTGTATGAGGTGGAAAGATGTCAACCACTCTGTGCTACAACACTTACAGGTTACCATCATTTAGAG
AAGACATCGTTGTGTGACATTTTGAAGCAAAGAGCTCCTCGACAGTATCGTATCAGAGCAAAGCTAAGAT
CATACAAGCCCAGAAGACTTCCTCAGTCTGTTAAACTTTTTTGTCCTAAATGCCATTTATTGCAAGAAAT
TCCATCTGAGGAAAATGTGGATAAAATTTTACAAGATGCTACAGCTACAGCCCCAGACTGCAAGCTGCAA
GATACACCATTGTATGACTCAGAGGTCTGGACCACTGAAGGCCAAGGAGGACGGCAGGTTGCTGTCCATT
TTGTAAAGAATGACGGCGTCCTTCCTCACTCAAGTGAATGTCTGGTTTTGATCGAAGGAGGCCGGCTCTG
TGAAATCTCTAGACTGTCAAGCATGTTTCACAGTGTGATCCCTGTGCGGTCTGGCCCTGAGGACCTGGAG
CTCGTAGATCTCGCAGCACCATTCCTCATACGAGGGAAGGTGTGTCACTATGGATGTAAACAGTGCTCAA
ACTTGAAAACCATACAAAACTTAAGTATCATTCCTAATAAAAGACTATGGATTCCTTCCTCTGTGGCAGA
AGTTCTGGGCATTGTACCTCTACAGTATGTGTTTGTTATGACTTTCATGTTTGATGATGGAACCGGAGTA
TTGGATGTCTACCTCAAGGATTCTGAGAAGTTTTTCCAGATCCCAGCATCAGAAGTCCTTACTGATGATG
ACCTTCAGAGAAATCTGGAACAGATCATGAATGTCATTTGTCCTCCAGGAATAAAAATAGATGCGCACCC
ATGGCTGGAGTGCCTCATCAAGTCCTACAACGTCACAAGTGGAACAGAACATCAAATATGTTACCAGATA
TTTGACACCATGATTGCAGAAGACATCATCTAG

Translation (640 aa):
MSSAPVAPSTYTPLNLLKEGTVVNVCGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCMLFSRDYDTLP
SVYKVGDIVCFQGLKIQAYKNELQAISKFGFASLTFDGTLGAPIILRTLSKRFNFTAQDYSMVEALRTWA
STHISASSNLVQLSDAQPMQYYDLTCQLLGKAQVDGVSFLLKVWDGTRTKIPSWRVCIQDVAFEGDLSHI
LQLQNLVVDIVVYDNHVQVAKSLKIGSFLRIYSLHTKLQPINSESTTSLVRLEFHLHGGTSYGRGIRVLP
ESNYDVDQLKKALESVDLEAIQTSDDTYQSDNVENCLTSSSSESDLVSLYEVERCQPLCATTLTGYHHLE
KTSLCDILKQRAPRQYRIRAKLRSYKPRRLPQSVKLFCPKCHLLQEIPSEENVDKILQDATATAPDCKLQ
DTPLYDSEVWTTEGQGGRQVAVHFVKNDGVLPHSSECLVLIEGGRLCEISRLSSMFHSVIPVRSGPEDLE
LVDLAAPFLIRGKVCHYGCKQCSNLKTIQNLSIIPNKRLWIPSSVAEVLGIVPLQYVFVMTFMFDDGTGV
LDVYLKDSEKFFQIPASEVLTDDDLQRNLEQIMNVICPPGIKIDAHPWLECLIKSYNVTSGTEHQICYQI
FDTMIAEDII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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