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Report for CCDS50133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50133.1 Public Mus musculus 17 Tfeb 23 108 98 CCDS HistoryNCBI Gene:21425Re-query CCDS DB by CCDS ID:50133.1Re-query CCDS DB by GeneID:21425See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086932.9 ENSMUSP00000084151.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086932.9Link to Ensembl Protein Viewer:ENSMUSP00000084151.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086932Re-query CCDS DB by Protein ID:ENSMUSP00000084151
Original member Current member EBI ENSMUST00000113288.7 ENSMUSP00000108913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113288.7Link to Ensembl Protein Viewer:ENSMUSP00000108913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113288Re-query CCDS DB by Protein ID:ENSMUSP00000108913
Original member NCBI NM_001161722.1 NP_001155194.1 Updated not alive Link to Nucleotide Sequence:NM_001161722.1Link to Protein Sequence:NP_001155194.1Re-query CCDS DB by Nucleotide ID:NM_001161722Re-query CCDS DB by Protein ID:NP_001155194
Current member NCBI NM_001161722.2 NP_001155194.1 Accepted alive Link to Nucleotide Sequence:NM_001161722.2Link to Protein Sequence:NP_001155194.1Re-query CCDS DB by Nucleotide ID:NM_001161722Re-query CCDS DB by Protein ID:NP_001155194Link to BLAST:NP_001155194.1
Original member NCBI NM_001161723.1 NP_001155195.1 Updated not alive Link to Nucleotide Sequence:NM_001161723.1Link to Protein Sequence:NP_001155195.1Re-query CCDS DB by Nucleotide ID:NM_001161723Re-query CCDS DB by Protein ID:NP_001155195
Current member NCBI NM_001161723.2 NP_001155195.1 Accepted alive Link to Nucleotide Sequence:NM_001161723.2Link to Protein Sequence:NP_001155195.1Re-query CCDS DB by Nucleotide ID:NM_001161723Re-query CCDS DB by Protein ID:NP_001155195Link to BLAST:NP_001155195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155194.1 475 Q9R210 475 100% 0 0
NP_001155195.1 475 Q9R210 475 100% 0 0

Chromosomal Locations for CCDS 50133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47785987 47786196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47786278 47786532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47786931 47787011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47788026 47788146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47788237 47788293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47788909 47788984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47789661 47789808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47791335 47791814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCGTCACGCATCGGGCTGCGCATGCAGCTCATGCGGGAGCAGGCCCAGCAGGAGGAGCAGCGAGAGC
GCATGCAGCAGCAGGCTGTCATGCATTATATGCAACAGCAGCAGCAGCAGCAGCAGCAGCTGGGTGGGCC
CCCCACCCCAGCCATCAACACCCCTGTCCACTTCCAGTCGCCCCCGCCTGTGCCCGGGGAGGTGCTGAAG
GTGCAGTCCTACCTGGAGAACCCCACCTCCTACCACCTGCAACAGTCCCAGCATCAGAAGGTTCGGGAGT
ATCTGTCTGAGACCTATGGGAACAAGTTTGCTGCCCACGTGAGCCCAGCCCAAGGTTCCCCGAAGCCTGC
CCCAGCAGCATCCCCAGGGGTGCGGGCTGGACACGTACTGTCCACCTCGGCCGGCAACAGTGCTCCCAAC
AGTCCCATGGCCATGCTACATATCAGCTCCAACCCCGAGAAAGAGTTTGATGATGTCATTGACAACATTA
TGCGCCTGGACAGCGTGCTGGGCTACATCAACCCTGAGATGCAGATGCCTAACACGCTGCCCCTGTCTAG
CAGCCACCTGAACGTGTACAGCGGTGACCCCCAGGTCACAGCCTCCATGGTGGGTGTCACCAGCAGCTCC
TGCCCTGCCGACCTGACTCAGAAGCGAGAGCTAACAGATGCTGAGAGCAGAGCCCTGGCCAAGGAGCGGC
AGAAGAAAGACAATCACAACCTAATTGAGAGAAGACGCAGGTTCAACATCAATGACCGGATCAAGGAGCT
GGGAATGCTGATCCCCAAGGCCAACGACCTGGACGTGCGCTGGAACAAAGGCACCATCCTCAAGGCCTCT
GTGGATTACATCCGGAGGATGCAGAAGGACCTGCAGAAGTCCCGGGAGCTGGAGAACCACTCCCGGCGCC
TGGAGATGACTAACAAGCAGCTCTGGCTCCGCATCCAGGAGCTGGAGATGCAGGCACGCGTGCACGGCCT
CCCCACCACCTCGCCGTCGGGTGTGAATATGGCCGAGCTGGCCCAGCAGGTGGTGAAGCAAGAGTTGCCC
AGTGAGGATGGCCCAGGGGAGGCGCTGATGCTGGGGCCTGAGGTCCCTGAGCCTGAGCAAATGCCGGCTC
TTCCTCCCCAGGCTCCGCTGCCCTCGGCCGCCCAGCCACAGTCTCCGTTCCATCACCTGGACTTCAGCCA
TGGCCTGAGCTTTGGGGGTGGGGGCGACGAGGGGCCCACAGGTTACCCCGATACCCTGGGGACAGAGCAC
GGCTCCCCATTCCCCAACCTGTCCAAGAAGGATCTGGACTTAATGCTCCTAGATGACTCCCTGCTCCCCC
TGGCCTCTGACCCCCTCTTTTCTACCATGTCTCCTGAGGCCTCCAAGGCCAGCAGCCGCCGGAGCAGCTT
CAGCATGGAGGAGGGTGATGTTCTGTGA

Translation (475 aa):
MASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLK
VQSYLENPTSYHLQQSQHQKVREYLSETYGNKFAAHVSPAQGSPKPAPAASPGVRAGHVLSTSAGNSAPN
SPMAMLHISSNPEKEFDDVIDNIMRLDSVLGYINPEMQMPNTLPLSSSHLNVYSGDPQVTASMVGVTSSS
CPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKAS
VDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPTTSPSGVNMAELAQQVVKQELP
SEDGPGEALMLGPEVPEPEQMPALPPQAPLPSAAQPQSPFHHLDFSHGLSFGGGGDEGPTGYPDTLGTEH
GSPFPNLSKKDLDLMLLDDSLLPLASDPLFSTMSPEASKASSRRSSFSMEEGDVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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