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Report for CCDS50046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50046.1 Public Mus musculus 17 Tead3 23 108 98 CCDS HistoryNCBI Gene:21678Re-query CCDS DB by CCDS ID:50046.1Re-query CCDS DB by GeneID:21678See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114799.7 ENSMUSP00000110447.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114799.7Link to Ensembl Protein Viewer:ENSMUSP00000110447.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114799Re-query CCDS DB by Protein ID:ENSMUSP00000110447
Original member Current member NCBI NM_001098226.3 NP_001091696.2 Accepted alive Link to Nucleotide Sequence:NM_001098226.3Link to Protein Sequence:NP_001091696.2Re-query CCDS DB by Nucleotide ID:NM_001098226Re-query CCDS DB by Protein ID:NP_001091696Link to BLAST:NP_001091696.2

Chromosomal Locations for CCDS 50046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28332720 28332833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28332951 28333103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28333192 28333332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28333506 28333679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28333791 28333936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28334384 28334445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28334704 28334753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28334899 28335036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28335485 28335496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28336511 28336573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28340154 28340218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28341349 28341600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28350568 28350595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCAACTCGGAGGCCTCGCGCGCAGAGGCTCAGGCCATCCAGGGGGCTCAGGCCCAGAGCCCAAAGCAA
CCAGCACAATAGCGTCCAACAGCTGGACCGCCAACAGCAGCCCCGGGGAGGCCCGGGAAGATGGGTCCGA
AGGCCTGGACAAGGGTCTGGACAACGATGCGGAGGGAGTGTGGAGCCCGGACATCGAGCAGAGCTTTCAG
GAGGCCCTGGCCATCTACCCGCCTTGCGGACGGCGCAAGATCATCCTGTCAGATGAGGGCAAGATGTACG
GTCGAAATGAGCTGATTGCCCGCTACATCAAGCTGAGGACTGGAAAAACCAGGACAAGAAAACAGGTGTC
CAGCCACATACAGGTTCTAGCTCGGAAGAAGGTTCGGGAATACCAGGTTGGCATTAAGGCTATGAACCTG
GACCAAGTCTCCAAGGACAAAGCTCTCCAGAGCATGGCATCCATGTCGTCTGCCCAAATCGTCTCTGCCA
GCGTTCTACAGAACAAGTTCAGCCCGCCCTCCCCTCTACCCCAGGCTGTCTTCTCCTCCTCCTCAAGGTT
CTGGAGCAGCCCCCCTCTGCTAGGACAACAGCCTGGACCTTCTCAGGACATCAAGCCCTTTGCCCAGCCT
GCCTACCCCATCCAGCCTCCCTTGCCACCAGCGCTCAACAGTTATGAGTCCCTCGCCCCGCTGCCCCCAG
CCGCTGCCTCAGCCACCGCCTCTGCGCCTGCATGGCAGGACCGCACCATCGCCTCCTCCCGGCTACGCCT
CCTGGAGTATTCTGCCTTCATGGAGGTGCAACGGGACCCTGACACGTACAGCAAACACCTGTTTGTACAC
ATCGGCCAGACAAACCCTGCCTTCTCAGACCCACCCCTGGAGGCAGTGGATGTACGACAGATCTACGACA
AGTTCCCCGAGAAGAAGGGGGGGCTGAAGGAACTCTACGAGAAGGGGCCCCCGAACGCTTTCTTCCTTGT
CAAGTTCTGGGCTGACCTCAACAGCACAATCCAGGAAGGCCCTGGGGCCTTCTACGGGGTCAGCTCGCAG
TACAGCTCAGCCGACAGCATGACCATCAGCGTCTCCACCAAGGTCTGCTCCTTCGGCAAGCAGGTGGTAG
AGAAGGTGGAGACCGAGTACGCCCGCCTGGAGAACGGCCGCTTCGTGTACCGCATCCACCGCTCACCCAT
GTGCGAGTACATGATCAATTTCATCCACAAACTGAAGCATCTGCCCGAGAAGTACATGATGAACAGTGTG
CTGGAGAACTTCACCATCCTGCAGGTGGTCACAAGTCGGGACTCGCAGGAGACCCTGCTGGTCATTGCTT
TTGTCTTTGAAGTCTCCACCAGCGAGCATGGGGCGCAGCACCACGTCTACAAGCTTGTCAAAGACTAG

Translation (465 aa):
MQLGGLARRGSGHPGGSGPEPKATSTIASNSWTANSSPGEAREDGSEGLDKGLDNDAEGVWSPDIEQSFQ
EALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREYQVGIKAMNL
DQVSKDKALQSMASMSSAQIVSASVLQNKFSPPSPLPQAVFSSSSRFWSSPPLLGQQPGPSQDIKPFAQP
AYPIQPPLPPALNSYESLAPLPPAAASATASAPAWQDRTIASSRLRLLEYSAFMEVQRDPDTYSKHLFVH
IGQTNPAFSDPPLEAVDVRQIYDKFPEKKGGLKELYEKGPPNAFFLVKFWADLNSTIQEGPGAFYGVSSQ
YSSADSMTISVSTKVCSFGKQVVEKVETEYARLENGRFVYRIHRSPMCEYMINFIHKLKHLPEKYMMNSV
LENFTILQVVTSRDSQETLLVIAFVFEVSTSEHGAQHHVYKLVKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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