NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49931.1 Public Mus musculus 17 Synj2 23 108 98 CCDS HistoryNCBI Gene:20975Re-query CCDS DB by CCDS ID:49931.1Re-query CCDS DB by GeneID:20975See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115791.9 ENSMUSP00000111457.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115791.9Link to Ensembl Protein Viewer:ENSMUSP00000111457.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115791Re-query CCDS DB by Protein ID:ENSMUSP00000111457
Original member Current member NCBI NM_001113353.2 NP_001106824.1 Accepted alive Link to Nucleotide Sequence:NM_001113353.2Link to Protein Sequence:NP_001106824.1Re-query CCDS DB by Nucleotide ID:NM_001113353Re-query CCDS DB by Protein ID:NP_001106824Link to BLAST:NP_001106824.1

Chromosomal Locations for CCDS 49931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5941451 5941577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5975795 5975881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5985972 5986242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5990136 5990361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5996878 5996961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6003099 6003160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6005323 6005419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6007938 6008110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6009732 6009813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6010396 6010545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6010660 6010825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6013508 6013699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6016266 6016347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6017487 6017627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6019286 6019478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6022099 6022257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6023659 6023815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6024984 6025101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6026156 6026374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6026477 6026555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6027147 6027315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6028419 6028586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6029700 6029834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6032697 6032809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6033815 6033923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6035411 6035559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6037384 6038115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4440 nt):
ATGGCTCTAAGCAAAGGGCTGCGGCTGCTGGCGCGGCTGGACCCCACTGGCCCGAGCAGCGTGCTGTTGG
AGGCGCGGGGCCGCGGCGACTGCCTGCTCTTCGAGGCCGGCGCAGTGGCCACGCTGGCTCCGGAAGAGAA
GGAAGTCATTAAAGGACTGTATAGCAAGCTGACGGATGCCTATGGCTGCCTCGGGGAGCTGAGGTTACAA
TCCGGTGGCGTCCCCTTGAGCTTTCTGGTGTTGGTGACAGGCTGCATGTCAGTGGGCAGAATTCCAGATG
CAGAGATCTACAAAATCACTGCCACTGAGTTGTACCCCCTGCAGGAAGAGGCCAAGGAAGAGGACCGCCT
GCCCACCTTAAAGAAAATCCTGAGCTCAGGGGTGTTCTATTTCGCATGGCCCAATGATGGCGCCTGCTTC
GATCTGACCATCAGGGCTCAGAAACAGGGTGATGACGGCTCTGAATGGGGGACCTCTTTCTTCTGGAACC
AGCTATTGCATGTGCCTCTGCGGCAGCACCAGGTGAACTGTCATAACTGGTTGCTGAAAGTCATCTGTGG
GGTGGTGACCATCCGCACAGTATATGCCTCCCACAAGCAGGCCAAGGCCTGTCTCATCTCTCGCATCAGC
TGTGAACGCGCAGGTGCTCGCTTCCTCACCCGTGGTGTGAACGATGATGGCCACGTGTCCAACTTTGTGG
AGACAGAGCAGACGATTTACATGGATGATGGAGTATCGTCCTTTGTCCAGATCCGAGGCTCCGTTCCGCT
GTTCTGGGAGCAACCAGGACTTCAGGTTGGCTCCCATCATCTGAGACTGCACAGAGGCCTAGAGGCCAAC
GCTCCTGCTTTTGAAAGGCACATGGTGCTTCTGAAGGAGCAATACGGTAAGCAGGTGGTTGTGAACCTGC
TGGGTAGCAGAGGCGGTGAAGAGGTGCTCAACAGAGCCTTCAAGAAGTTGCTCTGGGCTTCTTGCCACGC
GGGTGACACACCTATGATAAATTTTGACTTCCATCAGTTTGCCAAAGGTAGGAAGCTAGAGAAATTGGAG
AACCTGTTGAGACCTCAGTTACAGCTACACTGGGAAGACTTCGGCGTGTTTGCGAAGGGCGAGAATGTAA
GTCCACGGTTTCAGAAAGGCACTCTGCGGATGAACTGTCTCGACTGTCTGGATAGAACCAACACTGTGCA
GTGCTTCATTGCTCTTGAGGTCCTTCATCTGCAGCTTGAGAGCTTGGGGCTAAATTCAAAGCCCATCATT
GACCGTTTTGTGGAGTCCTTCAAAGCCATGTGGTCTCTGAATGGGCACAGCCTGAGCAAGGTGTTCACAG
GGAGCAGGGCCCTGGAAGGAAAGGCCAAGGTGGGAAAGCTGAAGGATGGGGCCCGATCCATGTCTCGCAC
CATCCAGTCCAACTTCTTCGACGGGGTGAAGCAGGAGGCCATCAAGCTACTGCTAGTCGGAGATGTCTAC
AATGAAGAGTCTACAGACAAAGGACGGATGCTGCTGGACAACACGGCCCTTCTGGCGACCCCCAGGATCT
TGAAGGCCATGACAGAACGCCAGTCGGAATTCACGAATTTCAAGCGCATCCAGATTGCTGTGGGGACCTG
GAATGTGAACGGAGGAAAGCAATTCCGTAGCAATCTCCTGGGGACGGCTGAGCTCACGGACTGGCTCCTA
GATGCTCCTCAGCTGTCAGGAGCAGTGGACTCCCAGGATGATGGCAGTCCTGCTGACGTATTTGCCATCG
GGTTTGAGGAGATGGTGGAACTGAGTGCGGGAAATATTGTCAATGCCAGCACCACCAACAGGAAGATGTG
GGGCGAGCAGCTTCAGAAAGCCATCTCCCGCTCCCATCGGTACATCCTCTTGACCTCCGCACAGCTGGTG
GGCGTCTGTCTTTACATCTTTGTACGTCCGTACCACGTCCCGTTCATCAGAGACGTGGCCATCGACACCG
TGAAGACCGGCATGGGGGGAAAGGCGGGGAATAAGGGTGCTGTGGGCATCCGCTTCCAGCTCCACAGCAC
CAGTTTCTGCTTCGTCTGTAGCCACCTGACGGCTGGGCAGTCTCAGGTGAAGGAGAGGAATGAAGACTAC
CGGGAGATCACGCACAAACTCTCCTTCCCTTCGGGGAGAAACATATTTTCACATGATTACGTGTTTTGGT
GTGGCGATTTCAACTACCGTATTGATCTTACTTACGAAGAAGTCTTCTATTTTGTTAAACGCCAAGACTG
GAAGAAACTTATGGAATTCGATCAGTTACAGTTACAGAAATCAAGTGGAAAAATTTTTAAAGACTTTCAT
GAAGGAGCCGTTAACTTCGGACCCACCTACAAGTATGACGTTGGATCAGCTGCCTACGACACAAGTGACA
AGTGCCGTACCCCAGCCTGGACAGACAGGGTGCTGTGGTGGAGGAAGAAGCATCCATATGATAAAACAGC
TGGTGAACTCAACCTTCTAGACAGCGATCTAGACGGCGATCCCCAAATCAGACACACCTGGTCTCCAGGC
ACTCTGAAATACTACGGCCGTGCAGAGCTGCAGGCGTCTGATCACAGACCTGTGCTGGCCATTGTGGAGG
TGGAGGTTCAAGAGGTGGATGTAGGAGCCCGGGAGAGGGTCTTCCAGGAAGTGTCCTCTGTCCAAGGCCC
GCTGGATGCCACCGTTGTTGTAAACCTCCAGTCTCCAACCCTAGAAGAGAAAAATGAATTTCCAGAGGAC
CTGCGCACAGAACTTATGCAGACTTTGGGGAATTATGGGACGATTATTCTAGTCAGGATCAACCAAGGGC
AGATGCTGGTGACGTTTGCAGACAGCCACTCGGCTCTCAGTGTGCTGGATGTGGATGGTATGAAGGTGAA
AGGCAGGGCCGTGAAGATTCGACCAAAGACCAAAGATTGGCTAGAAGGCCTGAGAGAGGAGCTTCTCCGG
AAGCGAGACAGCATGGCCCCTGTGTCTCCCACCGCCAACTCCTGCTTGTTGGAGGAGAACTTTGACTTCT
CGAGTCTGGACTATGAGTCCGAAGGGGATGTTCTTGAAGAGGATGAAGACTATTTAGTGGATGGGTTTGG
CCAGCCTGTAGTCTCAGACAGTGAGCTCGGTGGAGACAACTCTTCCGACACCATGAGCTCCTTGACACCC
GCCAGCAAGTCTCCCGCCCTGGCTAAAAAGAAGCAACATCCAACATACAAAGACGACGCTCACCTGGTGA
CCTTAAAGCAGGAGCTGGAAGTTGCTGGGAATTTTCGCCACCGTTCTCCGAGCAGGTCCCTGTCCGTCCC
CAATAGGCCTCGGCCACCTCACCCACCACAGAGACCCCCCCCTCCAACTGGCTTAATGGTGAAGAAGTCA
GCCTCAGACGCGTCCATCTCTTCTGGCACTCATGGACAATATTCCATCTTGCAGACAGCGAAACTTCTCC
CAGGAGCACCCCAGCAACCACCCAAGGCTAGAACTGGAATAAGTAAACCTTACAACGTCAAACAGATCAA
AACCACCAACGCTCAGGAGGCAGAAGCAGCTATCCGGTGTCTCCTGGAAGCTAGCGGAGGGGTCCCGGAA
TCAGCCCCAGGTGCCATACCCCTGAGAAACCAAGGGTCTTCTAAGCCAGAGGCCACCCTGGGGCCCCCAG
CCCTGCCCCGCCGGCCTGCTCCAAGGGTTCCCACTATGAAGAAACCAACTTTGAGGAGGACAGGAAAGCC
CATGTTACCAGAAGAAAACTTTGAGCCACAGCCTGTCCATTTTACAATGGCTTCCCAGGAAATGAACCTT
GAGACCCCTCCTCCAATAACAGCTACTCCCATCCCGCCTGTTCCCAAACCAAGAACACTTCAGCCTGGGA
AAGGTGTTGAGGGGAGGCCAAGCAGCGGTAAGCCAGAACCAGATGAAGCTCCTTCCGTGACAGGCACTGT
GGAGTCACCACCTCCAGAGGCCCAGGAGGCCCCGTCTCTGGCTCCCAAGGTGCCTCCGAGGAGGAAGAAG
TCTGCACCAGCGGCCTTCCACCTGCAGGTCCTGCAGAACAACAGCCAAGTTCTCCAGGGCCTCACGTGCT
CCAGCAGTTCTCCACCCTCACTGAAGCCCGACACCCACCCGCTCTGTCTACAAGTGGCACTTGGCACTTC
ATCTGCCAGAAGCCCTGAAACCCATGGCCCCAGAGTGACAGAGCCCGAGGCGGCCTCTTTTCATGGCAAC
TATCCAGATCCCTTCTGGAGCCTTCTCCACCACCCTAAGCTGTTGAACAATACCTGGCTGTCCAAGAGCT
CCGAGCCTTTAGACGTGGGGTCCAGGAACCCTGAGAGGACACACACAGAGCCGGCACAGGTCAATGCATC
GTTGGCTGAGAGGGGGCTTCCACCAGACCATGGGGGAAAAGACTTAAGTCACTGGGTGACAGCTAGTAAC
AAAGACAAGAGGACAACATTAGGTGTTTGA

Translation (1479 aa):
MALSKGLRLLARLDPTGPSSVLLEARGRGDCLLFEAGAVATLAPEEKEVIKGLYSKLTDAYGCLGELRLQ
SGGVPLSFLVLVTGCMSVGRIPDAEIYKITATELYPLQEEAKEEDRLPTLKKILSSGVFYFAWPNDGACF
DLTIRAQKQGDDGSEWGTSFFWNQLLHVPLRQHQVNCHNWLLKVICGVVTIRTVYASHKQAKACLISRIS
CERAGARFLTRGVNDDGHVSNFVETEQTIYMDDGVSSFVQIRGSVPLFWEQPGLQVGSHHLRLHRGLEAN
APAFERHMVLLKEQYGKQVVVNLLGSRGGEEVLNRAFKKLLWASCHAGDTPMINFDFHQFAKGRKLEKLE
NLLRPQLQLHWEDFGVFAKGENVSPRFQKGTLRMNCLDCLDRTNTVQCFIALEVLHLQLESLGLNSKPII
DRFVESFKAMWSLNGHSLSKVFTGSRALEGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVY
NEESTDKGRMLLDNTALLATPRILKAMTERQSEFTNFKRIQIAVGTWNVNGGKQFRSNLLGTAELTDWLL
DAPQLSGAVDSQDDGSPADVFAIGFEEMVELSAGNIVNASTTNRKMWGEQLQKAISRSHRYILLTSAQLV
GVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQLHSTSFCFVCSHLTAGQSQVKERNEDY
REITHKLSFPSGRNIFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLMEFDQLQLQKSSGKIFKDFH
EGAVNFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPYDKTAGELNLLDSDLDGDPQIRHTWSPG
TLKYYGRAELQASDHRPVLAIVEVEVQEVDVGARERVFQEVSSVQGPLDATVVVNLQSPTLEEKNEFPED
LRTELMQTLGNYGTIILVRINQGQMLVTFADSHSALSVLDVDGMKVKGRAVKIRPKTKDWLEGLREELLR
KRDSMAPVSPTANSCLLEENFDFSSLDYESEGDVLEEDEDYLVDGFGQPVVSDSELGGDNSSDTMSSLTP
ASKSPALAKKKQHPTYKDDAHLVTLKQELEVAGNFRHRSPSRSLSVPNRPRPPHPPQRPPPPTGLMVKKS
ASDASISSGTHGQYSILQTAKLLPGAPQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRCLLEASGGVPE
SAPGAIPLRNQGSSKPEATLGPPALPRRPAPRVPTMKKPTLRRTGKPMLPEENFEPQPVHFTMASQEMNL
ETPPPITATPIPPVPKPRTLQPGKGVEGRPSSGKPEPDEAPSVTGTVESPPPEAQEAPSLAPKVPPRRKK
SAPAAFHLQVLQNNSQVLQGLTCSSSSPPSLKPDTHPLCLQVALGTSSARSPETHGPRVTEPEAASFHGN
YPDPFWSLLHHPKLLNNTWLSKSSEPLDVGSRNPERTHTEPAQVNASLAERGLPPDHGGKDLSHWVTASN
KDKRTTLGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH