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Report for CCDS49905.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
49905.1 |
Public |
Mus musculus |
16 |
Urb1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:207932](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:49905.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:207932](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 49905.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000140920.1 |
ENSMUSP00000114717.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000140920.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000114717.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000140920](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000114717](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_029497.1 |
NP_083773.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_029497.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083773.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_029497](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083773](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_083773.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 49905.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6834 nt): ATGGGGGTCCCCAAGAGGAAGGCGTCAGAGGGTCCCAGCAGCGCGGCGTCCCCCGCTGGCACAGTCAAGC GAACGCGAGCGGAGGAGTTCACGGGCGTGCGGTTCAAGACCCTGCTGAAGGATGCGCAGGGCCCAGGACC GGCTTTGGAAGCCTTCGTCTCTGCTGCCAAGAAGCTACCGCAGGAAGACATGTGTGATGTTGTCGAGGGC TACATCAAGATTTCCATGGAATGTGCAGAGATTTTCCAGCTCCTGAGTGGGGAGAAGCGGCCCGAGAGTG AAATGCTGTTAATATTTCAAGCTTTCGAGGCCATATTACTGAGGACAGCCAGTGATCTTACGCATTTCCA CGTGGTGGGTGCCAACATTGTGAAGAAGCTGCTGTACAACCACATGAAGCTCCTCTGTGAGTCCCTGTAT GCGTCTGGTTACAGGATGGCTCGAGCCTGCCTGGACCTGATGACTGCCATGGTGACCCAGGGTCCTGAAG CTGCCAGAGATGTGTGCAGCTCTTTGGATTTGAATAAAAAAGCCTTGTTTGCCTTGGTGACCAAGAGGGA TTCAAAGGGAGTGCATGACGTCCGGCTGGCCTACATCCAGTTTGCCCTTTCCTTCCTAATTGCGGGTGAT GACAACACCATTGGACAAGTCCTGGAGATAAAAGAATTTATCCCCTGCATCTTTAGCTCAGGTATAAAGG AGGATAAGATTTCTACCATCAACATTTTATTGTCCACACTGAAAACAAAGGTGATTCACAATAAAAACAT CACGAAAACCCAGAAGGTGCGTTTCTTTACTGGGCAGTTTCTGAACCATATAGCTGCTCTCTACAACTGG AACGGGATCACAGATGTCACTCCAGAAAAGCCAGAAAGTGCTGCGATATCAGCTGAAGAGGCGGGGAAAG CCATGGTGAGGGACCTCGTTCATAACTTCCTGATGGATCTCTGCTGTTCTCGAAAGCATGGGATTAGTTT TTATGATGCCTCTTTGGGAACTTCTGGCAGAGGAGGCAACCTGACACTCTTGCACTTCTTGTTGAGTTTG AAAACTGCAGCTGGTGATGACCTGGTGGCCTCACTTGTGGTGAGCATTCTGAAGGTGTGCCCGGACCTGC TGACCAAATACTTCAAGGAAGTCACATTTTCCTTTCTCCCAAGAGTGAAGTCCACTTGGCTAAACAACGT GAAGCTGCTAAACAAGATCTATGAGGCCCAGCCAGAGATTTCCCCGGCCTTTTGGACCAGAGAGTTTATC CCATTGCCAAGGCTCCTGGCGATGGTGATGGTGACCACAGTGCCTCTGGTGTGCAATAAGATCATGTTCA CTCAGGCATTAAATTTGGACAGCATACCTGTAAAACACTCAGCATTATCCCTTATTTCGGACATTTTGAA GAGAGCATTAAAAACAGTTGACCACTGTCTGGACAAAGAGACATGGCAAGATTCAGACGTGTACACAGCT GAGATGATGGAAGAATTTGTTCAGCTCTTCAGAGAAGCCTTGGGCAAGATTTTGCCAGATCTGAACACTG TTATTTGGGTTTGGCAGTCATTTAAAAAGCAAGAGATTAAGGAGGACCATGAGAAAGGGAAGAAGAGCAG CAGCAAGACTCCTGCTGTCTCTAAAGCTGCCCAGCATGATGTTGCAGAAACAATTCTTCTGAAATCAGTT CTGCTCCAGGTCATATGCCTCTACCAGCAGGTCGTTCCCCACGTGATCATGCAGTACAACTTTGACTTCA GCAAGCTCCTAAAAGGCATCATCTCTGAGCAGGGCCCTTCTCAGGAGGTCCCGCCCATCCTGCAGCACCA CATGCTCAAGGTGGCCCTGGAACTGCCTGCTAACAAGTTTTTGTGGCTAAAGGCACAGGAAGGCCCCGAG GCAGAAATCATTGGAGGAGAACGCTCGGTTTTTTACCTGCTGATGAAGATGTTTGTGAATAGTAACCATT TGCAGCTCAAGTCCTCCACTAAGCTTCTGATCATGAAGATCCTCCGGGACACGGGTGTGTTCGAGCACAC GTGGAGAGAGCTGGAGCTCTGGCTGGAGCACCTGGACAGCACTGCAGAGGAGCGCAAGGAAGCCGTCATT CAGTTCCTGGAGCGGATTTTACTGACACTGGTGATGAATCCTTACTCATACACGGACAAAGCTTCTGAGT TTGTCCAAGAAGCCAGCACCCTGCAGGCCTCTATGGGGAAGCAAGATGCAGATGATGTCAGCATCCCCAT CTCCCATATTGATGATGTGCTGGACATGGTGGACGTCCTGGTGGAAGGCAGCGAGGGCCTGGACGAGGAT ATTGGGTTCTTGTTAAATGAAGACATGATTCTGCTCACCTTCCCCTTCAGTGCTCTGGTCCCTGCAGCTC TGGAAGCCAGGAATAAGCTGCTCCTTGGGACAGACTGTGAAGCAGGGGAAAGCATCATGGCATATATGAC TGCAGTGTTGACCGACCTTCTCCATACCCAGAGGGACCCCCTAGCTCTGTGTCTTCTGCTCCAGTCTTAC GACAAGTTTGAGCCTGTTAGCCTGCTCTGCGGTCAGCAGCTTGCCCAGTTTCACAGATACTACAGTCTCT GGATTCCTGCGCAAGCCCAAGAGGCCTTGCCGCTGCAGGTGTCCAGCAGCTCAGGACCATGTACACTCCC GCCATCTTCCTGCTTCTCCACGCTGCTGCAAACAGCCTATGAAAGCCAGACACTTGGGGATAAGAGTGTT CAGGCACAGCTTCTCGCCGCTGTCCCAAGCCTGGCTCTGCAGCACATGCTGCGCTCAGCCAAGCAGGTAC TGCTGTACCTCAAGAGCACCGTGGAGAACTTCAGCCAGCTGGGCAGAAGTGTGGGCCCAGCTCTGCTTCA GTCCCTCCTGGGCCTCCTTAAGCAGCTGGTCATCCACGCTGAGCGGCTGGACGCCCAGAACCAGCAGAAG CTAGAGGCTGCCCGGGCCGAGTCGGATCTCTTTTTGGACATGGAGTCTGTGGCTTCCCTTGAGTTGGCTA CTGACAAGACGATAGAGGAGCTGCTGCTGGCTATCCTTAAACATCCCACACTGGAGACTTGGTTTCTCGC CCTGGAGCAGAAAGCCTTGCCCCCCCACACGCTCAGCCCTATTCTTGTGAAGCTCCTAGCAGCCCACTTC AGTGCAGGGGTTCTTCAGCTACTGGTGGCAAGTTCCCCAATTCTCCATAAACTGGGCCAGTTGGGCCTTC TGGCAAAGTACTCAGAAGCCATCACTCAAAGTGTGCTGATAGAGCTCCGCACAAGGACTCTGAACTCAAC CTCAACGCCCAAGACTCTGCCTCAGCTGGAGGCCCTGCGAGAGCTGCACCCGTACATGGAAGGTGTCCAG ATTCGAGAAGTCACCCTGGCCCTACTGGCCCTGCCAGAGGCCCACCTGCTGACCCAGCAAGGCACACAGT CTCTTGGGAAGGAGAGACACTTAAGCAGTCTTGGAAAGACCCTGGTACAACTGCTGGCAAGCAGCCACCA GGATCAGCTGCAGAGCAGTGAGCTACTCTGGTGCGCCGAGTATGTGCGAGGCCTGGGGGCTCTGCTCCCC ACTCTGGCTGAGCATGAGCTGGACACGGTATTCCTTCAGACTCTTCAGAAAGACCCCGTGCTGGCCCCTG TGGTCCCCGAGGGCGTGCTTGAGTACTGCCTGGCCCGACGGACACAGACAGCCCTGGGCATTGCCAGCCT CCTGCTTCAGTACAGCGGCACCCACCTTGTGAAGTTTGAGCTGTGGTGTGGGCAGCCTGGTGTGGGGCCC ACCTTGCAGGAGCACCTAGATGACTTCTTCCCCCTTATCCATGTGTACCTCCAGCACAGGGCGCAAGGAA GCTTCATGCGGCCAACAGGAGTATCCTCTGCTGTCACTCCTGTCTTGAAGGCCCTGTGGAGACAAGTGCG AGACAGGTTCTTTCATATCACTGGGCCTTCCAAAGATGCGCTGCATCTGGAGGCCCTGGCCCAGCTCATT CCATTTGCAAGAACCAAGGATCTGCATGTCCTCATGGACCATTTACCCAACACGCTTCGGACTCTGAGTA ATCACAAGAGTTGGACCCTGGCTGACTCTGTCTCAGCAGCCTTGGCAGAGTCAGCAGAAGAGCTGGGCTC CTGGAGGAAGACCCTCCTGCGGTCCTGTATACAGTGGCTGGCTGTGTCCTTCAGTGGCAGGGAGCCAGAA GATGAAAACACCCAGGAGCACGAGAAGGCAATGCTGGTCCGGTTAAGCGAGTTGTTGCATGCGGTTAAGG AGGTTGACCCTGGTGACTGGCAGCAGTTTGTGAAGACAGGACTCAAATTTCGGTACCATGACCTCACCTT TTTGAAGACTCTGCTCAGTGCCACAAAGCTCCTGTATGGTCCAGAAAGCTCTGGGCGCACGAAACTTGTC CAGCTTTCAGTGGTCCACATGATGCTCACCCAGCACTCTCTGTTTTTGCCAACCATGTTGTCATCTGAAG AAGAGGAAACTCCAGACAGTGGAGTAAAAGAAACCCTGCTGGACCTGATGTCCACAGTGGTGAGGCTGTG CCCTTCTGTCTGTCAGAGCAGCCACTTTGCTGTGCTACTTGGGACCTACAGTGCCACCCTCAGTGTGCTG GACCAGAAGATTTTACTTCTCCTCCGTGCATATGAACAGAACAACCTCAGCCTCATCAGTTTCAGGGTTC TGCTGTGGGGCCCAGCAGCAGTGGAACATCACAAGACATGCCGGAGCCTGGGCAAGTCACTTTGGCAGCA GCCAAGCGTTGGGGACATCCTCCGCCTGCTGGACCCAGACCGGATGATGCAGACCATCCTGCACTTCCCG CAGTACCGGAAGCTGCTGCCCACGGAGGACACAGGGGAGCCACTGGTGTTTAAGGACAAGACTGCGAGAG TGGACCTCGACAGCCTCTATGACCCCTGCTTTCTTCTCCATCTCTTTGGGGAACTGACCAGGCCAGAGTT TGTGGTGGATTGTCGAAAATTTTTGGACTCAAACGCCCTGGGTTTAACTGTGGCAGCCCTCAGCAGCTAC GACCCCCAGATGCGAGCTGCAGCCTACTATGTCCTCGCAGCCTACTACTCACACCTGGAGGGAGCTCGCT TCCGGGAACAGTCCCAAGTTCTGTACCTGCTCGATGTTGTCCGCAATGGGATTAGAACTCCAAACCTGAG GCTCCCTTTCACCGTGGCCCTTTTCATCGCCAAGGCAGCCGTGCAGATCTTGAAACCAGAGGAGCACATG TACTGGAAGATCAGCAAGTTCCTGCTGTCACACGAGAACTTGAACATGGACAAACTGCCAGGCTTCTACC AGTTCTTCTACAGCTCTGACTTCCAGCAAAAAACTGAACAAGAATGGGTGTTGGAAATTCTACGGCAGGG GATTAGAGACAAGCACTGCTATGAGCTATGCTCTAGAAGAGGCGTGTTCCACATCATCCTGTCCTTCTTC AATAGCCCCTTGTGTGACGAAGTTGCTCAGAATTGGATTCTGGAAATCCTGCAGAATGTTGCCCACATCA CCAGATCTGCCTATGAAGTCATACGTGACTATAGCCTTTTAACGTGGGTTTTACACATCCTTGAGAGCAG ATTTGTAGAGACTCAGCTGCTGTCCAACGTGATCTCCTTGTTACACACCCTGTGGGTGACCAACCTGGGC AACAAAGCGCCGGAGGAGAGAAGCCAGCCACCTGGCCAGGTCGGCTCCCAGGAATCCGAGAAGATGCTTG CCTTGCACATGGTCAGTGAGTTCCTGTATGTCCTCATTGCGCTTACAAAGCACCTGAGGCCCACCTTGGC TTCTGCCCAGCTGATGAACTTCTTTTGGACACTTGAATCTGTGCTGAGTTATCGGGCCACCATCATAAAA TTATTCAAGGACATGGGCCGATTCACTGTGAACAAGGTGGCACTTTCTACCAAAGATGTCCTGATCCTCT TACACAAGTGGAGCCTCATTGAAAGAGACACGAAGCTCCAAGGAGAGCTGAAAGCAGTCATTGAGCAGCA CCAAGCCAAGGACCTAATGAAAATGCTCAAGGATAAGAGCAGGCCTGTGGTAGCTGCCCAGGCCCGAGGC CCACGAGGCCGGAAGAGGAGGCATGGAGGGCTGGAGGAGACTGCTGAGCCCCAGCTGGAAGCATCTTGCT TGGAGAAATGCAAGGACCTCCTGAGGGCCACACTGACCCACTGGGGGCCCGGTGACCCCTTGCCTGGTCC CACACAGGGGTCTGTGGGCCAGACTATCCCCAAGAGTAAAACACTGAGCTCTGCGCATGCTGCTGTTTCT TTGGTGGCCAGCTGGGTGCTTCGGTCATTGGCTGAGCGCCCTGTCAGCAGGGCAGAGGTCACAAGACTCC TTGACTGGCTCAAGAGCCACATTTTGCCACAGCCAATGGTAGTAGCTGACCTTCTCGGGGACAGCGCCGT GAAGACTGGCATCTTTAAGCTGTATAATCATCACTGCAGTGCCCAGGGCCTCGTGGGACCTGCACAGGAT GTGGCCTGCAAGTTCAGCACGGTCATGCTGCAGTTGTTGGTGGCCCAGGGCCGGAAAGAGAGCCCTTTCC ACTCGGTGGCAGAGGCCCTGTGCCTTGATTCTCTGAATGAAAAGGAAGAAGCCAAACGAGCTCCTGCAGC GTTCCTGGTGTCTCTGTATGTTAAGGACATGTGGCTGGGGGCCCAGCAGCCAGATACCTTCCTTGCTCAC ATCCGAATGGTCTGTGAGGCTGCAAAGGACGTGCCACTTGATGAGCCCGAGGCCATTGTTGTGCTCTGCA GGAACGTGGACTCCTCAGCCCAGTGCTTGACTCGCTCCCGCTGA
Translation (2277 aa): MGVPKRKASEGPSSAASPAGTVKRTRAEEFTGVRFKTLLKDAQGPGPALEAFVSAAKKLPQEDMCDVVEG YIKISMECAEIFQLLSGEKRPESEMLLIFQAFEAILLRTASDLTHFHVVGANIVKKLLYNHMKLLCESLY ASGYRMARACLDLMTAMVTQGPEAARDVCSSLDLNKKALFALVTKRDSKGVHDVRLAYIQFALSFLIAGD DNTIGQVLEIKEFIPCIFSSGIKEDKISTINILLSTLKTKVIHNKNITKTQKVRFFTGQFLNHIAALYNW NGITDVTPEKPESAAISAEEAGKAMVRDLVHNFLMDLCCSRKHGISFYDASLGTSGRGGNLTLLHFLLSL KTAAGDDLVASLVVSILKVCPDLLTKYFKEVTFSFLPRVKSTWLNNVKLLNKIYEAQPEISPAFWTREFI PLPRLLAMVMVTTVPLVCNKIMFTQALNLDSIPVKHSALSLISDILKRALKTVDHCLDKETWQDSDVYTA EMMEEFVQLFREALGKILPDLNTVIWVWQSFKKQEIKEDHEKGKKSSSKTPAVSKAAQHDVAETILLKSV LLQVICLYQQVVPHVIMQYNFDFSKLLKGIISEQGPSQEVPPILQHHMLKVALELPANKFLWLKAQEGPE AEIIGGERSVFYLLMKMFVNSNHLQLKSSTKLLIMKILRDTGVFEHTWRELELWLEHLDSTAEERKEAVI QFLERILLTLVMNPYSYTDKASEFVQEASTLQASMGKQDADDVSIPISHIDDVLDMVDVLVEGSEGLDED IGFLLNEDMILLTFPFSALVPAALEARNKLLLGTDCEAGESIMAYMTAVLTDLLHTQRDPLALCLLLQSY DKFEPVSLLCGQQLAQFHRYYSLWIPAQAQEALPLQVSSSSGPCTLPPSSCFSTLLQTAYESQTLGDKSV QAQLLAAVPSLALQHMLRSAKQVLLYLKSTVENFSQLGRSVGPALLQSLLGLLKQLVIHAERLDAQNQQK LEAARAESDLFLDMESVASLELATDKTIEELLLAILKHPTLETWFLALEQKALPPHTLSPILVKLLAAHF SAGVLQLLVASSPILHKLGQLGLLAKYSEAITQSVLIELRTRTLNSTSTPKTLPQLEALRELHPYMEGVQ IREVTLALLALPEAHLLTQQGTQSLGKERHLSSLGKTLVQLLASSHQDQLQSSELLWCAEYVRGLGALLP TLAEHELDTVFLQTLQKDPVLAPVVPEGVLEYCLARRTQTALGIASLLLQYSGTHLVKFELWCGQPGVGP TLQEHLDDFFPLIHVYLQHRAQGSFMRPTGVSSAVTPVLKALWRQVRDRFFHITGPSKDALHLEALAQLI PFARTKDLHVLMDHLPNTLRTLSNHKSWTLADSVSAALAESAEELGSWRKTLLRSCIQWLAVSFSGREPE DENTQEHEKAMLVRLSELLHAVKEVDPGDWQQFVKTGLKFRYHDLTFLKTLLSATKLLYGPESSGRTKLV QLSVVHMMLTQHSLFLPTMLSSEEEETPDSGVKETLLDLMSTVVRLCPSVCQSSHFAVLLGTYSATLSVL DQKILLLLRAYEQNNLSLISFRVLLWGPAAVEHHKTCRSLGKSLWQQPSVGDILRLLDPDRMMQTILHFP QYRKLLPTEDTGEPLVFKDKTARVDLDSLYDPCFLLHLFGELTRPEFVVDCRKFLDSNALGLTVAALSSY DPQMRAAAYYVLAAYYSHLEGARFREQSQVLYLLDVVRNGIRTPNLRLPFTVALFIAKAAVQILKPEEHM YWKISKFLLSHENLNMDKLPGFYQFFYSSDFQQKTEQEWVLEILRQGIRDKHCYELCSRRGVFHIILSFF NSPLCDEVAQNWILEILQNVAHITRSAYEVIRDYSLLTWVLHILESRFVETQLLSNVISLLHTLWVTNLG NKAPEERSQPPGQVGSQESEKMLALHMVSEFLYVLIALTKHLRPTLASAQLMNFFWTLESVLSYRATIIK LFKDMGRFTVNKVALSTKDVLILLHKWSLIERDTKLQGELKAVIEQHQAKDLMKMLKDKSRPVVAAQARG PRGRKRRHGGLEETAEPQLEASCLEKCKDLLRATLTHWGPGDPLPGPTQGSVGQTIPKSKTLSSAHAAVS LVASWVLRSLAERPVSRAEVTRLLDWLKSHILPQPMVVADLLGDSAVKTGIFKLYNHHCSAQGLVGPAQD VACKFSTVMLQLLVAQGRKESPFHSVAEALCLDSLNEKEEAKRAPAAFLVSLYVKDMWLGAQQPDTFLAH IRMVCEAAKDVPLDEPEAIVVLCRNVDSSAQCLTRSR
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