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Report for CCDS49653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49653.1 Public Mus musculus 15 Fbxl6 23 108 98 CCDS HistoryNCBI Gene:30840Re-query CCDS DB by CCDS ID:49653.1Re-query CCDS DB by GeneID:30840See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023219.8 ENSMUSP00000023219.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023219.8Link to Ensembl Protein Viewer:ENSMUSP00000023219.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023219Re-query CCDS DB by Protein ID:ENSMUSP00000023219
Original member Current member NCBI NM_013909.2 NP_038937.2 Accepted alive Link to Nucleotide Sequence:NM_013909.2Link to Protein Sequence:NP_038937.2Re-query CCDS DB by Nucleotide ID:NM_013909Re-query CCDS DB by Protein ID:NP_038937Link to BLAST:NP_038937.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038937.2 535 Q9QXW0-1 535 100% 0 0

Chromosomal Locations for CCDS 49653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76535804 76535963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76536225 76536471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76536573 76536804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76536893 76537006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537090 76537197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537289 76537420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537723 76537786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537917 76538075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76538325 76538716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCTCCCGTGGCCTCTAGGCGAGTTAGACGTCGAGTTCGAAGCTCCAAGCGGCCCGATGCGCGGGGCC
GC
TCGGCGGAGGACTGGTGGTGGGACCGCCTGGCACCTCGCGGCTCTGGGTACCACCTGCTGCAAGCGGA
C
AGCATGTTGCTCGTGCTGCCGGACCTGGAGCCTCCCCGCGCTCGTGCGCACCGGCGCGCCCGTCGCCGC
GCT
CCGAGGTCACTGGCTCGTGGCCCCACGGCTGTCGCCAAGCCCAGGACCAAACCCCGACCGGAGCCGT
CG
CTCGATCAGGGCCTGGACTCTGGTTGGGGAGACCGTATTCCCTTAGAAGTCCTGGTGCATATTTTCGG
G
TTGTTGGTTGCGGCTCATGGGCCCATGCCGTTTCTTGGCAGGGCTGCACGCGTTTGCCGTCACTGGCAC
GAA
GCCACCTCCCATCCTTCACTCTGGCATACTGTGACCCTGTCACCCTCGCTGGTTGGCCGGGCTGGCA
AG
GGCAACCTTAAGGGAGAGAAGAAGCTCCTTGCTTGCCTGGAGTGGCTCGTACCCAATCGGTTCTCTCA
G
CTCCAGAGCTTGACCCTCATCCACTGGAAGTCTCAAGTACACTCTGTGTTGGAGCTGGTTAGCAAGTTC
TGC
CCTCGGCTCACCTTCCTCAAGCTTTCAGACTGCCACACTGTGACTGCTGAAACTCTGGTCATGTTAG
CG
AGAGCCTGCTGCCAGCTCCACAGCCTGGACCTACATCATTCCATGGTGGAGTCCACAGCTGTGGTGAG
C
TTCTTGGAGGAGGCCGGGTCCCGAATGCGTAAACTGTGGCTGACCTACAGTTCCCAGACGACGGCCATC
TTG
GGCGCACTGCTGGACAACTGCTGCCCACAGCTCCAAGTCCTCCAGGTCAGCACTGGCATGAACTGCA
AC
AACACACCCCTGCAGCTGCCTGTGGAAGCCCTGCAGAAAGGCTGCCCCCAGCTGCAGGTGCTGCGGCT
G
CTGAATCTGATTTGGCTTCCCAAGCCGTGTGGCCGAGGCGTGCCCCAGGGACCAGGCTTCCCCAGTCTT
GAG
GAGCTCTGTTTGGCTGGCTCCACCTGCAACTTTGTGAGCAATGAGGTTCTGGGCCGATTGCTCCATC
GC
TCCCCGAAACTGCGCATGCTGGACCTTCGAGGCTGCGCTAGGGTCACTCCTAGCGGTCTGTGTCATCT
G
CCATGTCAAGAGCTGGAGCAACTCTACCTGGGCCTGTATGGCATATCTGATGGCTTGACCCTGGCTAAG
GAT
GGCAGCCCCCTGTTGACCCGGAAGTGGTATCACACCCTGAGGGAGCTGGACTTCAGTGGCCAAGGCT
TC
AGCGAGAAGGACTTGGAACAGGCCCTGGCTGTTTTCTCGGGCACCCCTGGGGGCTTACACCCAGCCTT
G
TGCTCCCTCAACCTGAGGGGTACCCGAGTTACCCCAAGCACGGTCAGTTCTGTGATTAGTGGTTGCCCG
GGG
CTGCTGTATCTTAACCTGGAGTCCTGTCGTTGCCTCCCCCGAGGTCTGAAGCGCGTCTACCGGGGCC
TG
GAGGAAGTCCAGTGGTGTCTAGAGCAGCTACTTACCAGCCCGCCCTCTGCCAAAGAGCCCACTTAG


Translation (535 aa):
MAPVASRRVRRRVRSSKRPDARGRSAEDWWWDRLAPRGSGYHLLQADSMLLVLPDLEPPRARAHRRARRR
A
PRSLARGPTAVAKPRTKPRPEPSLDQGLDSGWGDRIPLEVLVHIFGLLVAAHGPMPFLG
RAARVCRHWH
E
ATSHPSLWHTVTLSPSLVGRAGKGNLKGEKKLLACLEWLVPN
RFSQLQSLTLIHWKSQVHSVLELVSKF
C
PRLTFLKLSDCHTVTAETLVMLARACCQLHSLDLHHSM
VESTAVVSFLEEAGSRMRKLWLTYSSQTTAI
L
GALL
DNCCPQLQVLQVSTGMNCNNTPLQLPVEALQKGCPQLQVLRLLNLIWLPKPCGRGVPQGPGFPSL
E
ELCLAGSTCNFVSNEVLGRLLHRSPKLRMLDLRGCARVTPSGLCHLPCQ
ELEQLYLGLYGISDGLTLAK
D
GSPLLTRKWYHTLRELDFSGQGFSEKDLEQALAVFSGTPGGLHPALCSLNLRGTRVTPSTV
SSVISGCP
G
LLYLNLESCRCLPRGLKRVYRGLEEVQWCLEQLLTSPPSAKEPT




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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