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Report for CCDS49371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49371.1 Public Mus musculus 13 Mocs2 23 108 98 CCDS HistoryNCBI Gene:17434Re-query CCDS DB by CCDS ID:49371.1Re-query CCDS DB by GeneID:17434See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015680.10 ENSMUSP00000015680.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015680.10Link to Ensembl Protein Viewer:ENSMUSP00000015680.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000015680Re-query CCDS DB by Protein ID:ENSMUSP00000015680
Original member Current member EBI ENSMUST00000166176.8 ENSMUSP00000125797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166176.8Link to Ensembl Protein Viewer:ENSMUSP00000125797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166176Re-query CCDS DB by Protein ID:ENSMUSP00000125797
Original member Current member EBI ENSMUST00000184672.7 ENSMUSP00000139298.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184672.7Link to Ensembl Protein Viewer:ENSMUSP00000139298.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184672Re-query CCDS DB by Protein ID:ENSMUSP00000139298
Original member NCBI NM_001113374.1 NP_001106845.1 Updated not alive Link to Nucleotide Sequence:NM_001113374.1Link to Protein Sequence:NP_001106845.1Re-query CCDS DB by Nucleotide ID:NM_001113374Re-query CCDS DB by Protein ID:NP_001106845
Current member NCBI NM_001113374.2 NP_001106845.1 Accepted alive Link to Nucleotide Sequence:NM_001113374.2Link to Protein Sequence:NP_001106845.1Re-query CCDS DB by Nucleotide ID:NM_001113374Re-query CCDS DB by Protein ID:NP_001106845Link to BLAST:NP_001106845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106845.1 189 Q9Z223-2 189 98.9418% 0 2

Chromosomal Locations for CCDS 49371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 114820849 114820946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114824567 114824694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114825211 114825361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114826158 114826281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114828289 114828357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGTCGAGCTTGGAGATCAGCAACTCCTGCTTCAGCCCGGAGATGAGGTTGCCATCATCCCGCCAATCAG
TGGAGGATAATGCATCTGAGCCATCTGGGAAAGATGTGGACGATGTCCAGGAGAAACCTAAAGACATAAT
ACAGTTCACTGCCGAGAAGCTCTCTGTGGGGGAAGTGTCACAGTTGGTGGTGTCCCCTCTGTGTGGTGCA
GTGTCTCTCTTTGTAGGGACTACAAGAAATAACTTTGAAGGCAAGAAAGTCATTAGCTTAGAATATGAAG
CGTATGTACCGATGGCAGAAAATGAAATCAGAAAAATTTGTAATGACATTAGACAGAAATGGCCCGTGAG
ACACATAGCAGTATTCCATCGGCTTGGTTTGGTTCCAGTGTCAGAAGCAAGCACAGTTATTGCTGTGTCT
TCAGCTCACAGAGCCGCGTCCCTCGAAGCCGTGAGCTACGCCATTGATTCTTTAAAAGCCAAGGTGCCCA
TATGGAAAAAGGAAATATATGAAGAATCAACCTCATCTTGGAAAAGAAACAAAGAGTGCTTCTGGGCAGC
TGGTGACTAG

Translation (189 aa):
MSSLEISNSCFSPEMRLPSSRQSVEDNASEPSGKDVDDVQEKPKDIIQFTAEKLSVGEVSQLVVSPLCGA
VSLFVGTTRNNFEGKKVISLEYEAYVPMAENEIRKICNDIRQKWPVRHIAVFHRLGLVPVSEASTVIAVS
SAHRAASLEAVSYAIDSLKAKVPIWKKEIYEESTSSWKRNKECFWAAGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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