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Report for CCDS49068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49068.1 Public Mus musculus 12 Prorp 23 108 98 CCDS HistoryNCBI Gene:66132Re-query CCDS DB by CCDS ID:49068.1Re-query CCDS DB by GeneID:66132See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021411.14 ENSMUSP00000021411.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021411.14Link to Ensembl Protein Viewer:ENSMUSP00000021411.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021411Re-query CCDS DB by Protein ID:ENSMUSP00000021411
Original member Current member EBI ENSMUST00000184766.7 ENSMUSP00000139204.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184766.7Link to Ensembl Protein Viewer:ENSMUSP00000139204.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184766Re-query CCDS DB by Protein ID:ENSMUSP00000139204
Original member Current member NCBI NM_025373.1 NP_079649.1 Accepted alive Link to Nucleotide Sequence:NM_025373.1Link to Protein Sequence:NP_079649.1Re-query CCDS DB by Nucleotide ID:NM_025373Re-query CCDS DB by Protein ID:NP_079649Link to BLAST:NP_079649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079649.1 584 Q8JZY4 584 100% 0 0

Chromosomal Locations for CCDS 49068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55303908 55304884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55306339 55306386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55308737 55308869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55338160 55338267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55377114 55377262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55379282 55379477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55382257 55382400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGACCTTCTATTTGTCTGGTTTTCGGAGCATCCCGAAACTTTGGAAGAGCAACCCTTACTTTGAGCTAG
GCCCTGCGACCTCTTCTACCCCCTTCTTTCTCTGTGCCATCGGGAACCAACAAAGATGGTTTTCTGTTAA
ACCTACTACCCCTCCAAATAGCAAAGCACTCAATCTACTGGATACCAAAGCTAGGACACACAGGAAAGGG
AATGACAACAATGGGCAGGTTTCTTCTGATCCTCATTACTTCGCTGCTGGAGCAGCTAAGAAGAGGTCCC
ACATAGGTGCTAACCCTCAGAATCAAGGTCATGCCTTGCCCGTGAGAAGCTCTGTCCAACTTCCAACTAA
ACCTTTGAATTCCGCAGAGTGGGATAAACTTAAAGAAGATTTCAAAGGAAAGGCCAGTTTTGAAGACTTC
ATCATTTCACAGATGGCACGCAACTGTTGTTCAGTAGATGTGGCCAAGTCTCTCCTGGCTTGGGTAGCAG
CAAAGAACAATGGCATCGTGGGCTATAATCTACTCGTCAAGTATTTATATCTCTGTGTCTTTCATAAGCA
GACGTCAGAAGTTATTGATGTCTATGAAATCATGAAAGCCAAGTACAAGAGTTTAGAATCTGGGGGTTAT
ACCCTTCTCATCCGGGGATTGATCCACTCAGACAGATGGAGAGAGTCCTTGTTGCTGTTAGAAGACATTA
AAAAAGTCATGGTCCCTTCCAAAAAGAACTATGGTGACTGTATACAAGGAGCCCTCCTTCATCAAGATGT
GAACACAGCTTGGAATTTGTATCAGGAATTGATAGGTCATAATCTCATCCCTCCGTTGGAAACTCTAAAA
GCCTTCTTTGATTATGGCAAAGACATAAATGATGATCACTATTCAGACAAACTCCTGGACATACTTTTGT
ATCTAAGGAATAATCAGCTGTATCCTGGAGAGTCATTTGCACACAGTATAAAAACGTGGTTTGAAAGTAT
CCCTGGAAGACAATGGAAAGGACAGTTCACCACAATTCAGAAAAGTGGCCAGTGCTCAGGCTGTGGCAGA
ACTATAGAGCCTATTCATCTGAGTCCAGAAGAGTATGAGTTTCTGAAGGAAAAAATCATGAGGGATGTGA
TAGATGGCGGCGACCAGTATAAGAAGACGACACCTCAGGAACTGAAGAGATTCGAGAGCTTTGTGAACTC
CTGTCCTCCTTTTGATATCGTTATTGATGGCCTCAATGTTGCAAAAATGTTTCCTAAGGGTCGTGAATCT
CAAAATCTCCTGGGTGTGGTTTCTCAGCTAGCCCAGCAGAATCTACAGTTGCTGGTCCTAGGCCGGAAGC
ACATGCTGAGACCCAGTTCCCAGTGGAGAAAGGAAGAGATGGAGCAGGTGCGAAAGCAAGCCCACTGTTT
CTTTGCTGATAACATCTCAGAGGATGATCCTTTCCTTCTGTACGCCACACTGAACTCAGGCAATCACTGC
AAGTTTATCACCAAAGACCTGTTGCGGGACCACAAGGCCTGCCTGCCGGATGCCCGGACTCAGCGCCTGT
TCTTTAAGTGGCAGCAGGGACATCAGCTGGCAATCATGAAAGGGTTTCAAAAATCAAAACTAACTTTCCA
GCATATCCTCAGCTATGACACAGTGGTACAAAGGACTGGAGACTCCTGGCACATTCCTTATGATGAAGAC
CTGGTGCAGAGATCCTCCTGTGAAGTGCCAACCAAATGGCTGTGCCTCCAGAGAAAGACACCCGACCCCT
GCTGA

Translation (584 aa):
MTFYLSGFRSIPKLWKSNPYFELGPATSSTPFFLCAIGNQQRWFSVKPTTPPNSKALNLLDTKARTHRKG
NDNNGQVSSDPHYFAAGAAKKRSHIGANPQNQGHALPVRSSVQLPTKPLNSAEWDKLKEDFKGKASFEDF
IISQMARNCCSVDVAKSLLAWVAAKNNGIVGYNLLVKYLYLCVFHKQTSEVIDVYEIMKAKYKSLESGGY
TLLIRGLIHSDRWRESLLLLEDIKKVMVPSKKNYGDCIQGALLHQDVNTAWNLYQELIGHNLIPPLETLK
AFFDYGKDINDDHYSDKLLDILLYLRNNQLYPGESFAHSIKTWFESIPGRQWKGQFTTIQKSGQCSGCGR
TIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVNSCPPFDIVIDGLNVAKMFPKGRES
QNLLGVVSQLAQQNLQLLVLGRKHMLRPSSQWRKEEMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHC
KFITKDLLRDHKACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGDSWHIPYDED
LVQRSSCEVPTKWLCLQRKTPDPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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