NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48998.1 Public Mus musculus 11 Usp36 23 108 98 CCDS HistoryNCBI Gene:72344Re-query CCDS DB by CCDS ID:48998.1Re-query CCDS DB by GeneID:72344See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092382.9 ENSMUSP00000090036.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092382.9Link to Ensembl Protein Viewer:ENSMUSP00000090036.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092382Re-query CCDS DB by Protein ID:ENSMUSP00000090036
Original member Current member EBI ENSMUST00000106296.8 ENSMUSP00000101903.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106296.8Link to Ensembl Protein Viewer:ENSMUSP00000101903.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106296Re-query CCDS DB by Protein ID:ENSMUSP00000101903
Original member Current member NCBI NM_001033528.1 NP_001028700.1 Accepted alive Link to Nucleotide Sequence:NM_001033528.1Link to Protein Sequence:NP_001028700.1Re-query CCDS DB by Nucleotide ID:NM_001033528Re-query CCDS DB by Protein ID:NP_001028700Link to BLAST:NP_001028700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028700.1 1098 B1AQJ2 1098 100% 0 0

Chromosomal Locations for CCDS 48998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118261999 118262130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118262389 118262504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118263035 118263136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118263643 118263842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118264698 118265240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118267802 118267932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118268544 118269212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118272132 118272270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118272951 118273051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118273516 118273656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118274968 118275079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118276139 118276221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118276760 118276830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118277268 118277335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118279205 118279307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118279816 118279926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118284859 118285080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118285738 118285990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3297 nt):
ATGCCTATAGTCGATAAGCTGAAGGAGGCTCTCAAGCCTGGCCGCAAGGACTCGGCCGAGGATGGGGACC
TGGGCAGGCTGCTGGCAGCCTCTGCCAAGAAGGTGCTTCTGCAGAGGATTGAGTTTGAGCCGGCCAGCAA
GAGCTTCTCCTACCAGCTGGAGTCCTTGAAGAGCAAATACGTACTGTTGAGCGCCAGGGCTGAGGGAGCC
AGTCGCCACAGGAGCGGAGATGAACTCCAGGCCAGGAAACCAGGCACCGAGCGTGTGTCTGGAAGTGGAG
GCGACGGAGTCCCTGCCCCGCAGAAAGTGCTCTTCCCTGTGGAGCGTCTGTCCCTGAGGTGGGAACGTGT
TTTCCGAGTTGGCGCAGGGCTGCACAACCTGGGTAACACCTGCTTCCTCAACTCCACCATCCAGTGCTTG
ACCTACACACCACCTCTGGCCAACTACTTGCTCTCCAAGGAGCACGCACGGAGCTGTCACCAAGGGGGCT
TCTGCATGCTGTGTCTCATGCAAAACCACATGGTCCAGGCCTTTGCCAACAGCGGCAATGCTATCAAGCC
CGTCTCCTTCATCAGAGACCTGAAAAAGATTGCCCGGCACTTCCGGTTCGGGAACCAAGAGGATGCACAC
GAATTCCTGCGGTACACCATTGATGCGATGCAGAAGGCCTGCTTGAATGGCTACGCTAAGTTGGATCGGC
AGACACAGGCTACTACCCTGGTGCATCAGATCTTTGGAGGCTATCTCAGGTCCCGAGTGAAGTGCTCTGT
GTGCAAGAGTGTCTCAGACACATACGATCCCTACTTGGACATAGCACTGGAGATCCGGCAAGCTGCAAAT
ATTGTGCGCGCTCTGGAACTTTTTGTGAAGTCAGATGTCCTGAGTGGAGAGAACGCCTATATGTGTGCTA
AGTGTAAGAAGAAGGTTCCAGCCAGCAAGCGCTTCACCATCCATAGAACATCCAATGTCCTGACTCTGTC
CCTCAAGCGCTTCGCCAACTTTAGTGGGGGGAAGATCACCAAGGATGTTGGCTATCCAGAGTTCCTGAAC
ATCCGTCCATACATGTCGCAGAGCAGCGGTGATCCTGTCATGTATGGGCTCTATGCTGTCCTGGTGCACT
CAGGCTACAGCTGTCACGCTGGGCACTACTACTGCTATGTGAAGGCCAGCAATGGACAGTGGTACCAGAT
GAACGACTCCTTGGTCCATTCCAGCAATGTCAAGGTGGTTCTGAACCAGCAGGCCTACGTGCTCTTCTAT
CTGCGGATTCCAGGCTCTAAGAAAAGTCCTGAGGGCCCTGTCTCCAGAGTGGGCGCCACTCTCCCTAGCC
GTCCCAAAGTTGTTCCAGAGCACTCCAAGAAGAGCCCTGGCAATGGGGTTGTTCCCTCCCCGCTGATGGC
AAAGCGACAAGACTCTGTAATGATGAGAAAGCTCCCAGCCCCTGAGGAGGTTGGCGTACCTGTGTCCAGA
AATGGCTCCCTTCCTGGCCTGAAGTTACAGAACGGATGTGCTCCTGCCAAGACACCTGCCGGGTCCCCGT
CCCCAAGACTCACGCCCACGCCCACTCATATGCCCACCATTCTGGATGAGCCCGGAAAGAAGGTGAAGAA
GTCAGCCCCACTGCAGTCTCTCACCACATCTCCAACCACTTCTCAGGGCTCTCCTGGGACCGGCGAGTCC
CGGAGCCAGCGGCCCGGCTCCTGGGCAAGCAGAGACACCATCTTCTCTACCTCCCCGAAGCTCCTGGCCA
GAGCCATTACTAACGGGCACAGGCTGAAGGGCGAAGGCAGTGGTGTGGACCTGGAGAAGGGGGATTCAAG
CAGCTCCAGCCCCGAGCACTCTGCCAGCAGTGACCCTGCCAAGGCCCCGCAGACCGCAGAGAGCAGAGCT
GCGCATGCCTGTGATTCTCAGGGAACAAACTGTCCCACCGCTGGCCATCCCAAAGCGCTGTTGAATGGAG
TAGATGCCAAGATGGTGAAGTTGAAGTCCCCGGCCCTGAGCAGCACCACAACCGAGCCCACAAGCCTCAT
GTCTCCTCCACCAGCCAAAAAACTGGCCCTGTCAGCCAAGAAGGCCAGCACCCTGCGGAGGGCGACCGGC
AATGACATCGGTTCACCTTCCCCCTCAGCATTCTGCGACCTCACCTCCCCCATGAAAGCCACCCACCCCG
TCGTTGCCTCCACTGGGCCTGTCAGTAAGACCAGGACTGCTGCACCTGCCCCCCGACCGTCCACCCACCC
CCACTCTGCATCTCTGTCCAGTAGTAGTGCCAAGCCCTTAGGGACATCAGAGCCACAGAGCTGCCGCCCC
TCTGCCTGGACACCCCTGCCTCAGGTCAATGGACACTTCACGTCCCACTTACACCAACTGCCAGAGGCCA
GCGAGGCCCTACACAGCCCCTCCAAAAAGAGGAAAAAGACCCCTAATGGAGATCCCCAGAGACTGGGCAT
CGACACGCTCCTCCCACAGTGCCTCAGGGGAGCACCTGCAGCAGCACGCAGGAAGAGAAAGAAGAGGTGC
TCGGAGGGTGAGGGTGCCACAGCTCCCAAGCAGGAAGGCCAATTTCAGGACCAGTCTTGGAGTTCCGGGA
GCCAGAAGGAAGAGGGTACGCAGCCCCAGGTAAATGGCCATCAAGTGAGTCACATTCTGGACAGTTACCA
TGTGAGCAGCAGGAAAAGGAGGAAGAGGAAAAGATCGGAAGGACTCAGCCAGGAAGCCACCCCGTCGCAG
GACCTAATTCAGCACAGCTGCTCCCCTGTAGACCACAGTGAGCCTGAGGCCAGGACAGAGTTGCAGAAGA
AGAAGAAGAAGAAAAGAAGGAAAAGAAAGCCCGAGCCACAGCAGGATGAAGAGAGCAAGCACCCAGGAGA
CCAGAGGAGCCCAAGGCCCAGTGTCACCCCAGTCCCTGCGTTGAGTGTGAATGGCCATCTTCCTAGTGAC
TGCTTGGGGCTGGGACAAGCACCTCTCGTTACCTGGAACAGAGATCAGGAACCCGATGTGGTCCAGGCGT
TGCTTCAGGACTCATCTGATAAGGCTTATGGGAAAAAAGTTTTGACCTGGGATGGCGAGCCTTCAGCCAT
CAGTCAGGACGCCATCAAAGACAGCAGACTAGCCCGGACCCAGACCGTGGTTGACGACTGGGATGAAGAG
TTTGATCGAGGGAAGGAAAAGAAAATTAAAAAGTTCAAGAGAGAAAAGAAGAGAAACTTCAATGCCTTCC
AGAAGCTTCAGAGTAGGCGCAACTTTTGGTCTGTGACGCATCCTGCTAAGGTGGCCAGCCTCAGCTATCG
CCGCTGA

Translation (1098 aa):
MPIVDKLKEALKPGRKDSAEDGDLGRLLAASAKKVLLQRIEFEPASKSFSYQLESLKSKYVLLSARAEGA
SRHRSGDELQARKPGTERVSGSGGDGVPAPQKVLFPVERLSLRWERVFRVGAGLHNLGNTCFLNSTIQCL
TYTPPLANYLLSKEHARSCHQGGFCMLCLMQNHMVQAFANSGNAIKPVSFIRDLKKIARHFRFGNQEDAH
EFLRYTIDAMQKACLNGYAKLDRQTQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYLDIALEIRQAAN
IVRALELFVKSDVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLN
IRPYMSQSSGDPVMYGLYAVLVHSGYSCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFY
LRIPGSKKSPEGPVSRVGATLPSRPKVVPEHSKKSPGNGVVPSPLMAKRQDSVMMRKLPAPEEVGVPVSR
NGSLPGLKLQNGCAPAKTPAGSPSPRLTPTPTHMPTILDEPGKKVKKSAPLQSLTTSPTTSQGSPGTGES
RSQRPGSWASRDTIFSTSPKLLARAITNGHRLKGEGSGVDLEKGDSSSSSPEHSASSDPAKAPQTAESRA
AHACDSQGTNCPTAGHPKALLNGVDAKMVKLKSPALSSTTTEPTSLMSPPPAKKLALSAKKASTLRRATG
NDIGSPSPSAFCDLTSPMKATHPVVASTGPVSKTRTAAPAPRPSTHPHSASLSSSSAKPLGTSEPQSCRP
SAWTPLPQVNGHFTSHLHQLPEASEALHSPSKKRKKTPNGDPQRLGIDTLLPQCLRGAPAAARRKRKKRC
SEGEGATAPKQEGQFQDQSWSSGSQKEEGTQPQVNGHQVSHILDSYHVSSRKRRKRKRSEGLSQEATPSQ
DLIQHSCSPVDHSEPEARTELQKKKKKKRRKRKPEPQQDEESKHPGDQRSPRPSVTPVPALSVNGHLPSD
CLGLGQAPLVTWNRDQEPDVVQALLQDSSDKAYGKKVLTWDGEPSAISQDAIKDSRLARTQTVVDDWDEE
FDRGKEKKIKKFKREKKRNFNAFQKLQSRRNFWSVTHPAKVASLSYRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH