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Report for CCDS48765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48765.1 Public Mus musculus 11 Il9r 23 108 98 CCDS HistoryNCBI Gene:16199Re-query CCDS DB by CCDS ID:48765.1Re-query CCDS DB by GeneID:16199See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48765.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128311.7 ENSMUSP00000119557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128311.7Link to Ensembl Protein Viewer:ENSMUSP00000119557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128311Re-query CCDS DB by Protein ID:ENSMUSP00000119557
Original member Current member NCBI NM_001134458.1 NP_001127930.1 Accepted alive Link to Nucleotide Sequence:NM_001134458.1Link to Protein Sequence:NP_001127930.1Re-query CCDS DB by Nucleotide ID:NM_001134458Re-query CCDS DB by Protein ID:NP_001127930Link to BLAST:NP_001127930.1

Chromosomal Locations for CCDS 48765.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32190612 32191046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32191765 32191849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32192647 32192752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32193174 32193381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32193734 32193879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32194359 32194537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32194626 32194737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32195073 32195183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32200191 32200218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCCCTGGGAAGATGCATTGCGGAAGGTTGGACCTTGGAGAGAGTGGCGGTGAAACAGGTCTCCTGGT
TCCTGATCTACAGCTGGGTCTGCTCTGGAGTCTGCCGGGGAGTCTCGGTCCCAGAGCAAGGAGGAGGAGG
GCAGAAGGCTGGAGCATTCACCTGTCTCAGCAACAGTATTTACAGGATCGACTGCCACTGGTCGGCTCCA
GAGCTGGGCCAGGAATCCAGGGCCTGGCTCCTCTTTACCAGTAACCAGGTGACTGAAATCAAACACAAAT
GCACCTTCTGGGACAGTATGTGTACCCTGGTGCTGCCTAAAGAGGAGGTGTTCTTACCTTTTGACAACTT
CACCATCACACTTCACCGCTGCATCATGGGACAGGAACAGGTCAGCCTGGTGGACTCACAGTACCTGCCC
AGGAGACACATCAAGTTGGACCCACCCTCTGATCTGCAGAGCAATGTCAGCTCTGGGCGTTGTGTCCTGA
CCTGGGGTATCAATCTTGCCCTGGAGCCATTGATCACATCCCTCAGCTACGAGCTGGCCTTCAAGAGGCA
GGAAGAGGCCTGGGAGCAGGCCCGGCACAAGGACCGTATCGTTGGAGTGACCTGGCTCATCCTTGAAGCC
GTCGAACTGAATCCTGGTTCCATCTACGAGGCCAGGCTGCGTGTCCAGATGACTTTGGAGAGTTATGAGG
ACAAGACAGAGGGGGAATATTATAAGAGCCATTGGAGTGAGTGGAGCCAGCCCGTGTCCTTTCCTTCTCC
CCAGAGGAGACAGGGCCTCCTGGTCCCACGCTGGCAATGGTCAGCCAGCATCCTTGTAGTTGTGCCCATC
TTTCTTCTGCTGACTGGCTTTGTCCACCTTCTGTTCAAGCTGTCACCCAGGCTGAAGAGAATCTTTTACC
AGAACATTCCATCTCCCGAGGCGTTCTTCCATCCTCTCTACAGTGTGTACCATGGGGACTTCCAGAGTTG
GACAGGGGCCCGCAGAGCCGGACCACAAGCAAGACAGAATGGTGTCAGTACTTCATCAGCAGGCTCAGAG
TCCAGCATCTGGGAGGCCGTCGCCACACTCACCTATAGCCCGGCATGCCCTGTGCAGTTTGCCTGCCTGA
AGTGGGAGGCCACAGCCCCGGGCTTCCCAGGGCTCCCAGGCTCAGAGCATGTGCTGCCGGCAGGGTGTCT
GGAGTTGGAAGGACAGCCATCTGCCTACCTGCCCCAGGAGGACTGGGCCCCACTGGGCTCTGCCAGGCCC
CCTCCTCCAGACTCAGACAGCGGCAGCAGCGACTATTGCATGTTGGACTGCTGTGAGGAATGCCACCTCT
CAGCCTTCCCAGGACACACCGAGAGTCCTGAGCTCACGCTAGCTCAGCCTGTGGCCCTTCCTGTGTCCAG
CAGGGCCTGA

Translation (469 aa):
MALGRCIAEGWTLERVAVKQVSWFLIYSWVCSGVCRGVSVPEQGGGGQKAGAFTCLSNSIYRIDCHWSAP
ELGQESRAWLLFTSNQVTEIKHKCTFWDSMCTLVLPKEEVFLPFDNFTITLHRCIMGQEQVSLVDSQYLP
RRHIKLDPPSDLQSNVSSGRCVLTWGINLALEPLITSLSYELAFKRQEEAWEQARHKDRIVGVTWLILEA
VELNPGSIYEARLRVQMTLESYEDKTEGEYYKSHWSEWSQPVSFPSPQRRQGLLVPRWQWSASILVVVPI
FLLLTGFVHLLFKLSPRLKRIFYQNIPSPEAFFHPLYSVYHGDFQSWTGARRAGPQARQNGVSTSSAGSE
SSIWEAVATLTYSPACPVQFACLKWEATAPGFPGLPGSEHVLPAGCLELEGQPSAYLPQEDWAPLGSARP
PPPDSDSGSSDYCMLDCCEECHLSAFPGHTESPELTLAQPVALPVSSRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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