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Report for CCDS48737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48737.1 Public Mus musculus 10 Vmn2r86 23 108 98 CCDS HistoryNCBI Gene:625109Re-query CCDS DB by CCDS ID:48737.1Re-query CCDS DB by GeneID:625109See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48737.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170257.3 ENSMUSP00000126596.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170257.3Link to Ensembl Protein Viewer:ENSMUSP00000126596.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170257Re-query CCDS DB by Protein ID:ENSMUSP00000126596
Original member Current member NCBI NM_001103365.1 NP_001096835.1 Accepted alive Link to Nucleotide Sequence:NM_001103365.1Link to Protein Sequence:NP_001096835.1Re-query CCDS DB by Nucleotide ID:NM_001103365Re-query CCDS DB by Protein ID:NP_001096835Link to BLAST:NP_001096835.1

Chromosomal Locations for CCDS 48737.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 130446199 130447103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130448579 130448702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130449787 130450011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130452338 130453141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130453536 130453818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130455689 130455894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGAAGAAAATGTGTGCTTTAACTATTTCATTTTTGCTTCTGAAGTTTTCTCTCCTTTTGTGTTGTTTGA
AAGAACCCATTTGCTTTTGGAGGATAAAAAGTAGTGAATATAATGATGGAGATTTGCAAAGTGAGTGTGG
TTATTTCCTTTGGACAATGAAGAAACTTATGAAAGATGATTTTTATAATGTAAGGTTGGATTTTAGAATA
CCAGCAAGTGAATATGAGTTTGTTCTGGTAATGTTTTTTGCTACTGATGAGATCAACAAGAATCCTGATC
TTTTACCAAACACCTCTTTGGTATTCTCTGTCATGGCTGGTAAATGTCAAGATTCATTGGGAAATCTGGA
CATACAATATATGCTAATAAATGACAGTCTGAATTATGTTAATTATGTCTGTGACATAGATGATTCATGT
GCCATAGGCCTTACAGGACCATCATGGAAAACATCCTTAAAACTGGCAATTGATTCTTGGACACCAACGG
TTTTCTTTGGACCATTTAATCCTAACCTGAGTGACCATGACCGTTTTCCCAATGTCCATCAGATAGCCAC
CAAGGACACACATTTGTCCCATGGCATGGTCTCCTTGATGCTTCATTTTAGATGGACTTGGATAGGACTG
GTCATCTCAGATGATGACCAGGGTATTCAGCTTCATTCAGATTTAAGAGAAGAAAGCCAAAGGCATGGTA
TTTGTTTAGCTTTTGTGAATGTGATCCCAGAAACCATGAAGATATACATGACAAGGGGTAATATGTATGA
TAAACAAATTATGACATCTTCAGCAAAGGTTGTTATCATTTATGGTGAAATGAACTCTACACTAGAAATT
AGCTTTAGAAGATGGGTATATTTAGGTGCTCGGAGGATCTGGATCACAACCTCACAATGGGATGTTATCA
CAAATAAAAAAGATTTCAGCCTTGATCTCTTCCATGGTACTGTCACTTTTGCACACCACAAAGGTTGGAT
TGCTAAATTTAAGAATTTTATGCAAACAATGAACACTTCCAAATACCCAATAAACATTTCTCAGTCAATA
CTGAGGTGGAATTATTTTAATTGTTCAGTCTCTAAGAACAGCATTAAAATGGATCATTTCACATGCAAAA
ACCCATTAGAATTGACAGCACTGCACAACTATGACATGGCCCTGAGTGATGAAGGTTACAATTTGTATAA
TGCTGTTTATGCTGTGGCCCACACCTACCATGAACACATTCTTCATCAAGTAGAGTCTCAAAAAATGGTG
GAAGACAAAGGAAAGTATACAGAATGTCAGCAGTTGGCTCTCTTGCTGAAAACTAGGGTATTTACTAACC
CTGTTGGAGAAATGGTGAACATGAATCATAGGGAATATCAGTGTGCAGAGTATGACATTTTCATCATTTG
GAATTTTCCACAAGGCCTTGGATTAAAAGTGAAAATAGGAAGCTATTTTCCTTGTTTCCCATGGAGTCAA
CAACTTCATATATCTGAAGATTTGGAATGGGCCACAGGAGGAACATCAGTACCCTCCTCCATTTGCAGTG
TGACATGTACTCCTGGATTCAGGAAAATTCATCAGAAAGAAACAGCAGACTGCTGCTTTGATTGTGTTCA
GTGCCCAGAAAATGAGGTTTCCAATGAAACAGTAGATATGGAACAGTGTGTGAGGTGTCCAGATGATAAA
TATGCCAATTTAGAGCAAATGCACTGCCTCCAAAGAGCTGTGTCATTTCTGGCTTATGAAGATCCATTGG
GGATGGCTCTGGGCTGCATGGCACTGTCCTTCACAGCCATCACAATTCTAGTACTAGTCACTTTTGTGAA
GTACAAGGATACTCCCATTGTGAAGGCCAATAACTGCATTCTCAGCTACATCCTACTCATCTCTCTAGTT
TTCTGCTTTCTCTGCTCATTGCTCTTCATTGGACATCCCAACCAGGTCACCTGCATCCTGCAGCAGACCA
CATTTGGACTATTTTTCACTGTGGCTGTTTCTACAGTGTTGGCCAAAACAATAACTGTGGTCATGGCTTT
CAAGCTCACTACTCCAGGAAAAAGGATGAGAGGGATGATGACAGGGGCACCTAAGTTGGTCATTCCCATT
TGTACCCTAATCCAACTTGTTCTCTGTGGAATCTGGTTGTTAACATCTCCTCCATTTATTGAAAGAGATA
TACAATCTGAACATGGGAAGACTGTCATTTTTTGCAACAAAGGCTCTGTCCTTTCCTTCCATGTTGTCCT
GGGATACTTGGGTTCCTTGGCTCTGGGGAGCTTCATTGTGGCTTTCCTGGCTAGGAACCTTCCTGACAGA
TTCAATGAAGCCAAGTTCCTAACTTTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTTCCTG
TCTACCACAGCACCAGGGGGAAGGTCATGGTGGTTGTGGAGGTCTTTTCCATCTTGGCTTCTAGTGCAGG
GTTGCTAGGGTGTATCTTTGTCCCAAAGTGTTATGTTATTTTAGTTAGGCCAGATTCAAATTATATACAG
AAGTTCAAAGGTAAATTGCTTTATTGA

Translation (848 aa):
MKKMCALTISFLLLKFSLLLCCLKEPICFWRIKSSEYNDGDLQSECGYFLWTMKKLMKDDFYNVRLDFRI
PASEYEFVLVMFFATDEINKNPDLLPNTSLVFSVMAGKCQDSLGNLDIQYMLINDSLNYVNYVCDIDDSC
AIGLTGPSWKTSLKLAIDSWTPTVFFGPFNPNLSDHDRFPNVHQIATKDTHLSHGMVSLMLHFRWTWIGL
VISDDDQGIQLHSDLREESQRHGICLAFVNVIPETMKIYMTRGNMYDKQIMTSSAKVVIIYGEMNSTLEI
SFRRWVYLGARRIWITTSQWDVITNKKDFSLDLFHGTVTFAHHKGWIAKFKNFMQTMNTSKYPINISQSI
LRWNYFNCSVSKNSIKMDHFTCKNPLELTALHNYDMALSDEGYNLYNAVYAVAHTYHEHILHQVESQKMV
EDKGKYTECQQLALLLKTRVFTNPVGEMVNMNHREYQCAEYDIFIIWNFPQGLGLKVKIGSYFPCFPWSQ
QLHISEDLEWATGGTSVPSSICSVTCTPGFRKIHQKETADCCFDCVQCPENEVSNETVDMEQCVRCPDDK
YANLEQMHCLQRAVSFLAYEDPLGMALGCMALSFTAITILVLVTFVKYKDTPIVKANNCILSYILLISLV
FCFLCSLLFIGHPNQVTCILQQTTFGLFFTVAVSTVLAKTITVVMAFKLTTPGKRMRGMMTGAPKLVIPI
CTLIQLVLCGIWLLTSPPFIERDIQSEHGKTVIFCNKGSVLSFHVVLGYLGSLALGSFIVAFLARNLPDR
FNEAKFLTFSMLVFCSVWITFLPVYHSTRGKVMVVVEVFSILASSAGLLGCIFVPKCYVILVRPDSNYIQ
KFKGKLLY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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