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Report for CCDS48513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48513.1 Public Mus musculus 10 Hbs1l 23 108 98 CCDS HistoryNCBI Gene:56422Re-query CCDS DB by CCDS ID:48513.1Re-query CCDS DB by GeneID:56422See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092674.13 ENSMUSP00000090344.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092674.13Link to Ensembl Protein Viewer:ENSMUSP00000090344.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000092674Re-query CCDS DB by Protein ID:ENSMUSP00000090344
Original member NCBI NM_001145209.2 NP_001138681.1 Updated not alive Link to Nucleotide Sequence:NM_001145209.2Link to Protein Sequence:NP_001138681.1Re-query CCDS DB by Nucleotide ID:NM_001145209Re-query CCDS DB by Protein ID:NP_001138681
Current member NCBI NM_001145209.3 NP_001138681.1 Accepted alive Link to Nucleotide Sequence:NM_001145209.3Link to Protein Sequence:NP_001138681.1Re-query CCDS DB by Nucleotide ID:NM_001145209Re-query CCDS DB by Protein ID:NP_001138681Link to BLAST:NP_001138681.1

Chromosomal Locations for CCDS 48513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 21296134 21296176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21299178 21299243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21304530 21304643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21307585 21307779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21309099 21310519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGCCCGGCATCGGAACGTCCGGGGATATAACTACGATGAAGATTTTGAAGATGATGATCTGTATGGGC
AGTCTGTGGAGGATGACTACTGTATCTCACCATCAACAGCCGCTCAGTTCATTTACTCACGCCGTGACAA
CCCTGAAGAAGAATATGGCTATGAAGATCTGAGAGAGTCTTCTAATTCTCTTTTGAATCACCAATTAAGT
GAAATTGACCAAGCTCGCCTGTATTCATGCCTTGATCACATGAGAGAGGTACTGGGGGACGCTGTGCCTG
ATGACATACTGACTGAGGCAATTCTGAAACACAAATTTGATGTGCAGAAGGCTTTGTCCGTGGTTCTGGA
ACAAGATGGTGTGCAGCCTTGGAAGGAGAAGAGTGAGCGAGCAGTGTGTGCAGGACAGCCTTCAAAAGGA
GTCTTATTTTCTTCCTTTGGAGTTTCACCCCAAAATGTTCACCATTCTTATCTTCAATCAGAAAATCATT
TGGATAGCAGTAGCAAACCTTTTGATTGTTGTAGCTCAATAGCAGAATATGGATCCCATAGTTCTTCACT
TGAGCCACGTCACTATTTACTTCATAGAAAAGAGAAACATGACAGACCCCAAAGTGAAAAGGAACTAGAA
TCATGTAAGTTAACAAAAGAGCTGGCTCTAGCTCACCTGATTCATGATACGCCAAGAGATTCTTGTGCAC
GCCAGCTGTCAGCCAGACTGCCACCCTCAGACAGCGGGCAGAGTGAGCTTCTTAAGAGCCTAGGTGCTGA
TGTGGTAAGACCTCCTGCATCTGCGTGTGCTCCTGAAGAGGATTTTACTTTCAAAGGGATACGAGACTTA
GAGTCCCTAGTGAGGGAGGACGTAGTAACTAGTGGTTCTTTGGGAATTCGGAGCAGCTCACTACCTGATT
TTCAAAGTACTCCCGTGCAGAACGTCTCAGCAAGCTTAAGTAATCCACTGCTGTTATCTAGCCCAGTGGA
AAATAATTCCAGTATAAACACTGAAGTTGAACAAAGTGCCAAGAATAATATTGTAAAAACTAACAGTTTA
CCATTTTCCCAGCGTGAAAGTCCATCCCTAGCTGAGCTGTTTGAGGAACACAGAGGAAGCAGCTCTGGCC
AGTGCTTTACTTTGTCTGACCTGTGTAACCAGTCACCTGCCAGCTTGGGTTCCCTTCCCCTGTCACAACT
GGCAAACCGCTCGCAGTCTGCTAACGGAGTATCAGAGTTAACAGGATCTCTGTCATCTTTGGCATTTTGT
AAAGCTGCCCCCACGAGAGACCTGGAGAATTTATCCCTTTCTGATTTGATTGCAAAAACGATTGAACTAG
ACAATTCTCAGATTAACAGAGATTCCTTTGAGTTTAGTTTATCTGAAACTATGAGGAGCCCTGAAGTTGA
TTCAAATATTGATCTTAGTGTCTTGATAAAAACTCCAGAGTTTGTCCCAAAGCCTGTAGTTGACCCATCA
GTTGCTGTAACACCAGACACTAAAGTTCTGAGTTCAAAGTTAGGGAAACCTTCCAATTCTACTAAGGATA
GTATGAAACCCAAAAGAGCCTCCCTTGCTAGGAAAGCTCCTCTGTCTCTGCCGTGGACCAAGGCCCTTGC
TGCTAGGCCTTCAGCTTTCGCGTCAACGCTGTGTCTTCGTTACCCACTGAAAAGCTGCAAGAGGCGCACT
CTTGAACTCTACAAGACTTTCCTTTATAGCAGACAAGTTCAAGATGTATCGGACAAAGAAATAAGTCCTC
TTGCAGCAATAACGCCATTTGACTTCAAATCAGCATCTCCTGATGACGTTGTAAAAGCTAATCAAAAGAA
GGCGTTTACTAGAGAATAG

Translation (612 aa):
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPEEEYGYEDLRESSNSLLNHQLS
EIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDGVQPWKEKSERAVCAGQPSKG
VLFSSFGVSPQNVHHSYLQSENHLDSSSKPFDCCSSIAEYGSHSSSLEPRHYLLHRKEKHDRPQSEKELE
SCKLTKELALAHLIHDTPRDSCARQLSARLPPSDSGQSELLKSLGADVVRPPASACAPEEDFTFKGIRDL
ESLVREDVVTSGSLGIRSSSLPDFQSTPVQNVSASLSNPLLLSSPVENNSSINTEVEQSAKNNIVKTNSL
PFSQRESPSLAELFEEHRGSSSGQCFTLSDLCNQSPASLGSLPLSQLANRSQSANGVSELTGSLSSLAFC
KAAPTRDLENLSLSDLIAKTIELDNSQINRDSFEFSLSETMRSPEVDSNIDLSVLIKTPEFVPKPVVDPS
VAVTPDTKVLSSKLGKPSNSTKDSMKPKRASLARKAPLSLPWTKALAARPSAFASTLCLRYPLKSCKRRT
LELYKTFLYSRQVQDVSDKEISPLAAITPFDFKSASPDDVVKANQKKAFTRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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