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Report for CCDS48415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48415.1 Public Mus musculus 1 Suco 23 108 98 CCDS HistoryNCBI Gene:226551Re-query CCDS DB by CCDS ID:48415.1Re-query CCDS DB by GeneID:226551See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048377.10 ENSMUSP00000044815.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048377.10Link to Ensembl Protein Viewer:ENSMUSP00000044815.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048377Re-query CCDS DB by Protein ID:ENSMUSP00000044815
Original member Current member NCBI NM_172645.3 NP_766233.2 Accepted alive Link to Nucleotide Sequence:NM_172645.3Link to Protein Sequence:NP_766233.2Re-query CCDS DB by Nucleotide ID:NM_172645Re-query CCDS DB by Protein ID:NP_766233Link to BLAST:NP_766233.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766233.2 1254 Q8C341-2 1254 100% 0 0

Chromosomal Locations for CCDS 48415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161818366 161818809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161820395 161820450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161827657 161827748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161828156 161828310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161829236 161829340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161833416 161833503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161834036 161835193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161837719 161837809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161838754 161838822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161844002 161844067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161844789 161844880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161845303 161845358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161845560 161845580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161847205 161847310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161848642 161848749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161852275 161852342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161852811 161852947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161853715 161853838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161856821 161856971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161857344 161857481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161859350 161859504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161862192 161862302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161863914 161864025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161876311 161876372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3765 nt):
ATGAAGAAGTACCGGCGGGCCTTGGCCCTGGTCTCCTGCCTCTCTCTCTGCTCTCTAGTCTGGCTTCCGA
GTTGGCATGTTTGCTGTAAAGAGAGTTCTTCAGCTTCAACATCATACTATTCTCAAGATGATAATTGTGC
AATAGGAAGTGAAGACACACAGTTCCAGAAAAAGAATGAAAGAGAGGAACCTAGTAATGCTGAGCTATCA
GGAAAATCAAATTCCTATTTAACTATATCTCCAGAAGGAAACAAAATAAAGGATGACTACACTGTGGATG
TACAAGATTTGGAAACAACGAAGTTAAGCCTCCCTGTGGTTGAAGCACTCCCTACAGTTGATTTGCATGA
AGAGTCTTCCAGTGTAGTTGTAGGCAGTGAAACCATTGAAAATAGTTCCAGTTCATCTACCTCAGAAAGG
ACTCCAGTCTCAGAGCTTGATGAAGTAGAAAAGTCTGGTACTTTATCTATAGCCAAGCCAGGTGAAGTGG
AGCAGCCTGAAGCTGACTGTGATGCTGGGGAGGCTCCTGATGCAGATGCTCCAGTGGAACAACCTGCTTT
TGTCAGTCCACCAGAGAGCCTTGTTGGCCAGCATATAGAGAATGTGTCATCTTCACACGGCAAAGAAAAA
GTAACAAAATCAGAATTTGAATCAAAAGTTTCAGTGAGTGAGCAAGACGGTGGTGATCCGAAGTCTGCAT
TAAACACTTCAGATACTTTAAAAAATGAGAGCTCTGATTATACAAAACCAGGAGAAACTGACCCTACATC
TGTCACAAGTCCCAAAGATCCAGAAGATATACCAACATTTGATGAGTGGAAGAAGAAAGTTATGGAAGTA
GAAAAAGAAAAAAGTTTGTCTACAGGTCAGTCGTTGCATCCGTCTTCTAATGGAGGTCCACATGCCACAA
AAAAGGTCCAGAAAAATAGAAATAATTATGCCTCTGTGGAGTGTGGTGCCAAAATTTTGGCAGCTAATCC
GGAAGCCAAGAGCACATCTGCTATTCTTATAGAAAATATGGACCTTTATATGCTGAATCCTTGCAGCACT
AAAATTTGGTTTGTTATTGAACTCTGTGAGCCAATTCAAGTGAAACAATTTGATATTGCAAATTATGAAT
TATTTTCTTCTACTCCCAAAGACTTTCTGGTTTCTATCAGTGACAGATATCCCACAAATAAATGGATTAA
GCTGGGTACTTTCCATGGTAGAGATGAGCGGAATGTCCAAAGTTTTCCCCTGGATGAACAGATGTATGCA
AAATACGTGAAGATGTTCATCAAGTACATAAAGGTGGAGCTGCTATCACATTTTGGATCAGAGCACTTTT
GTCCTTTAAGCCTAATAAGGGTTTTTGGTACTAGCATGGTGGAAGAATATGAAGAAATTGCTGACTCCCA
GTATCAGTCAGAACGTCAGGAACTATTTGATGAGGACTATGATTATCCCCTGGATTATAATACTGTGGAG
GATAAATCTTCAAAAAATCTTCTTGGTTCTGCTACAAATGCCATTCTAAATATGGTGAATATTGCTGCTA
ATATTCTGGGAGCAAAAACTGAAGACTTGACAGAAGGAAATAAAAGTATATCTGAGAATGCCACTGCCAC
AACTGAACCTAAAATGACTGAATCAACTCGTGTTTCAACTCCTGTTCCATCACCTGAATATGTAATCAAG
GAAGTCCATACACATGATAGAGAACCATCAACCTCAGATCCTCCAAAAGAGAGTCCGATTGTACAACTGG
TTCAGGAGGAAGAAGAGGAAGCGAGTCCATCTACAGTGACCCTTTTGGGCAGTGGTGAACAAGAGGATGA
GTCGTCATCCTGGTTTGAGTCTGAGACACACATACTTTGTAGTGAGCTGACTTCAATTTGTTGTATTTCT
AGTTTTTCGGAGTACATATATAAATGGTGCTCAGTTAGAATTGCTCTTTATCGACAACGCAGCAGGACTG
TGAGTAAAGGAAAAGATTTTGTGCCACCTCAGCCATCACTACTACTTCCTGTAGAATCAGTAGAGGTTTC
AGTACCGCAGCCTCCCAGTGGCGATGTGGATAGCGAGAACATGGAAAGAGAAGCTGAAACTGTTGATCTG
GATGATTTAAGTAGTGTGCACCAGGGGCATTTGATAAATCACACAGTGGACACAATTGAACTTGAACCAA
GCTACCCTCAAACTCTTTCTCAGTCTCTTCTCTTAGATGTTACTCCAGAAATGAATTCACTGTCTAAAGT
AGAAGGATCTGAGTCTGTTAAATCTGAAGGAGGATATATTCCATCACAATTGATGACCCAAGAGAGTTCT
GTTGAGTTTGATGATAAAACAGAAAAAAAGACCGAGAGCTTTAGTTCTGCTGAGAAGCTCTCTGTTATTT
ATGAAACAAGTAAAGTTAATGAGGTGATGGACAATACTGTGAAAGAAGACATACTCTCCACAGAAGTTGT
CACCAAGTTCCCTGAAACAGTAGTACCACCACCTATGAACACAGCCACTGTGCCAGAGGGTGAAAGTGTG
GAAACCAAACCTAGTATAGCTGATACACTAAAGCATACAGTGACTCCAGTTATGGATCCTTCATTGCCTG
AAGTGAAAGAGGATGAACAGTCTCCAGAGGATGCCCTTTTAAGAGGGTTACAGAGGACAGCTACAGATTT
CTATGCTGAATTACAAAATTCTACTGATCTGGGATATGGTAATGGAAATCTTGTGCATGGATCAAATCAG
AAGGAGTCAGTATTTATGAGGCTTAATAATCGTATTAAAGCCTTAGAAGTTAACATGTCTCTCAGTGGTC
GCTATCTGGAGGAGCTTAGTCAAAGGTACCGCAAACAAATGGAAGAAATGCAGAAGGCTTTCAATAAGAC
AATAGTTAAGCTTCAGAATACTTCACGGATAGCAGAAGAGCAGGATCAGCGGCAAACTGAAGCCATCCAC
TTGCTCCAGGCACAACTGACCAACATGACACAGCTTGTTTCAAACCTATCAGCAACTGTAGCAGAATTAA
AGCGGGAGGTTTCAGATCGTCAGAGTTACCTTGTCATGTCTTTGGTTTTATGTGTTGTCTTGGGACTGAT
GCTCTGTATGCAACGCTGTCGAACTACTTCTCAATTTGATGGAGATTACATTTCAAAACTTCCCAAAAGT
AATCAGTATCCAAGCCCTAAAAGGTGTTTCTCTTCCTATGATGACATGAATTTGAAAAGAAGAACATCAT
TTCCCCTCATCAGATCCAAATCTCTGCAGTTTACTGGCAAAGAAGTAGATCCGAATGATTTGTACATCGT
AGAACCCCTCAAGTTCTCTCCAGAGAAAAAGAAGAAACGTTGCAAGTACAAAACTGAAAAAATTGAGACA
ATAAAGCCTGCAGATCCATTGCACCCTATAGCAAATGGAGATATAAAAGGAAGAAAGCCCTTTACGAACC
AGAGAGATTTTTCTAACATGGGAGAAGTTTATCACTCTTCTTACAAGGGCCCTCCGTCTGAGGGCAGCTC
GGAAACTTCATCACAGTCAGAAGAGTCCTATTTTTGTGGCATTTCAGCTTGTACAAGTCTGTGCAATGGA
CAGACCCAAAAGACAAAAACTGAGAAGAGGGCTTTAAAACGAAGGCGATCTAAAGTCCAAGACCAAGGAA
AGTTAATAAAAGCTCTTATACAGACTAAGTCGGGGTCATTGCCGAGCCTGCATGACATAATCAAAGGAAA
CAAGGAGATCACCGTGGGAGCATTTGGGGTTACAGCAGTCTCGGGACATATCTAA

Translation (1254 aa):
MKKYRRALALVSCLSLCSLVWLPSWHVCCKESSSASTSYYSQDDNCAIGSEDTQFQKKNEREEPSNAELS
GKSNSYLTISPEGNKIKDDYTVDVQDLETTKLSLPVVEALPTVDLHEESSSVVVGSETIENSSSSSTSER
TPVSELDEVEKSGTLSIAKPGEVEQPEADCDAGEAPDADAPVEQPAFVSPPESLVGQHIENVSSSHGKEK
VTKSEFESKVSVSEQDGGDPKSALNTSDTLKNESSDYTKPGETDPTSVTSPKDPEDIPTFDEWKKKVMEV
EKEKSLSTGQSLHPSSNGGPHATKKVQKNRNNYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCST
KIWFVIELCEPIQVKQFDIANYELFSSTPKDFLVSISDRYPTNKWIKLGTFHGRDERNVQSFPLDEQMYA
KYVKMFIKYIKVELLSHFGSEHFCPLSLIRVFGTSMVEEYEEIADSQYQSERQELFDEDYDYPLDYNTVE
DKSSKNLLGSATNAILNMVNIAANILGAKTEDLTEGNKSISENATATTEPKMTESTRVSTPVPSPEYVIK
EVHTHDREPSTSDPPKESPIVQLVQEEEEEASPSTVTLLGSGEQEDESSSWFESETHILCSELTSICCIS
SFSEYIYKWCSVRIALYRQRSRTVSKGKDFVPPQPSLLLPVESVEVSVPQPPSGDVDSENMEREAETVDL
DDLSSVHQGHLINHTVDTIELEPSYPQTLSQSLLLDVTPEMNSLSKVEGSESVKSEGGYIPSQLMTQESS
VEFDDKTEKKTESFSSAEKLSVIYETSKVNEVMDNTVKEDILSTEVVTKFPETVVPPPMNTATVPEGESV
ETKPSIADTLKHTVTPVMDPSLPEVKEDEQSPEDALLRGLQRTATDFYAELQNSTDLGYGNGNLVHGSNQ
KESVFMRLNNRIKALEVNMSLSGRYLEELSQRYRKQMEEMQKAFNKTIVKLQNTSRIAEEQDQRQTEAIH
LLQAQLTNMTQLVSNLSATVAELKREVSDRQSYLVMSLVLCVVLGLMLCMQRCRTTSQFDGDYISKLPKS
NQYPSPKRCFSSYDDMNLKRRTSFPLIRSKSLQFTGKEVDPNDLYIVEPLKFSPEKKKKRCKYKTEKIET
IKPADPLHPIANGDIKGRKPFTNQRDFSNMGEVYHSSYKGPPSEGSSETSSQSEESYFCGISACTSLCNG
QTQKTKTEKRALKRRRSKVQDQGKLIKALIQTKSGSLPSLHDIIKGNKEITVGAFGVTAVSGHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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