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Report for CCDS48298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48298.1 Public Mus musculus 1 Sphkap 23 108 98 CCDS HistoryNCBI Gene:77629Re-query CCDS DB by CCDS ID:48298.1Re-query CCDS DB by GeneID:77629See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160953.7 ENSMUSP00000124872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160953.7Link to Ensembl Protein Viewer:ENSMUSP00000124872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160953Re-query CCDS DB by Protein ID:ENSMUSP00000124872
Original member NCBI NM_172430.4 NP_766018.3 Updated not alive Link to Nucleotide Sequence:NM_172430.4Link to Protein Sequence:NP_766018.3Re-query CCDS DB by Nucleotide ID:NM_172430Re-query CCDS DB by Protein ID:NP_766018
Current member NCBI NM_172430.5 NP_766018.3 Accepted alive Link to Nucleotide Sequence:NM_172430.5Link to Protein Sequence:NP_766018.3Re-query CCDS DB by Nucleotide ID:NM_172430Re-query CCDS DB by Protein ID:NP_766018Link to BLAST:NP_766018.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766018.3 1658 Q6NSW3-2 1658 99.8794% 0 2

Chromosomal Locations for CCDS 48298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 83257127 83257270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83263509 83263693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83263782 83263834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83267302 83267487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83275618 83279335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83280330 83280585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83288762 83288896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83290970 83291029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83339535 83339642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83362229 83362328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83407980 83408011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4977 nt):
ATGGATGTCAACTCCCGGCTTTCTGTGCAAAGCAACGTGGAATCACCACTGATGCATGAAGGTTCAGAGC
CACAGCAGATCACCAGCAGTGCAGCAGGCAACCTGGCTGGCTCCATCACGGCCTGTAAAAAGGTTCTTCG
AAGCAATAGCTTGCTGGAGTCCACAGACTACTGGCTGCAGAACCAGAGGACGCCTTGCCAGATTGGGTTT
GTGGAAGATGAGTCAGAAAACTGTGCTTCTGTCTGCTTTGTGAACCTGGATGTCAACAAAGATGCCTGCA
TCACAGAGAACCTGCAGCAGAAACTGGTCAATGTTTCACCGGACCTTCCAAACCTCATCAGCTCCATGAA
TGTCCAACAGCCGAAAGAAAATGAAATTGTCCTCCTAAGTGGGTTAGCCTCTGGAAACCTCCAGGCAGAT
TTTGATGTTTCACAGTGCCCTTGGCTACCAGATATCTGCTTGGTCCAGTGTGCAAGAGGGAACAGACCAA
ACAGTACCAACTGCATCATCTTTGAGATCAACAAGTTCTTAATTGGTCTGGAAGTAGTGCAGGAGCGTCA
GCTCCACCTGGAGACGAACGTGTTGAAGCTGGAGGATGATACAAACTGTTCTCTGTCTTCAATTGAAGAA
GATTTTCTTACAGCCTCCGAGCATTTGGAGGAAGAAATCGAGGTGGACGACTGCAGAAGTGGTTTGGAAA
ATACAAATGTGTCAGCTAATGTTTTGGAAAGTAAAAAGCCAAAGGAAACTACCCAGGAAGGATGGGATTA
CCACAAGGAAAAGTTGCATTGTGCTTTAGGGGAAAAACACATTAGAAAACACCGTACGCCCTCCACAAAA
ACAGAAGGGTCAAAGGAAAATACAGAAGAGAACACGTCCTTGAAAAGTCTCAATCGTTTAGTCAGGCCAT
CACACCTGAAAAGTGAAGTGGCGGGGAACAAGCAACTGGCCACAAACTACTCCTACCCAGAAAATATCAA
AGGGGAACTAGAAACATCTCAAATGCTGTTCATCCCTAGAGATGCCTATCTCTCCATGGTTAAGAAAGAT
GTACTTTCTCCGTGTAGTGTACTCAGTGAGCAGGGAGGCAGCCACAGAGACCATGACGTTACTCCAAACC
CTCTTCCTCCCGTTCAAAATGGAGAAGCCAGCACCGGAGAGTATGCCACAAACTTAGCAGAATCTGTAAT
GCAAGATGCCTTCATCCGATTGTCTCAGTCACAGCCCACACTCCCCCAGGAATCTGCAGTCAGTTTCTCT
ATGCGAAGTGCTCTCCTTCCCAGTGGCTGTTGCACAAAAGATATGGTGGTCCCTCGTTCATGGAACGAGC
TACCCAAAATTGTCATTGTGCAGAGCCCAGATGGCAGTGACACAGTCCCTGAGCCAAATGTCTCCTCCTG
GCCTGACATGGAATTTGTTGAAACCTCGGGCATCTTTTCTGCAGACAGTTCCAGCAGACCCACTCAGAGT
GCCCTAGAAGTTGCATTGGCTTGTGCAGCCACTGTGATTGGAACCATTTCCAGTCCACAGGCCACAGAAA
GATTCGCCATGGAGCAAGAATCCCTGGTATCTACCTATGCCCAGAGAGGCACTGGGGTACAGCAAACTCA
AGTGCCCCAAGCATTCATGGCACCTTCTACAACCGAGTATTCCTTCCCATCAGCTCTGTGTGGCATGACA
CAAGTGGCAAGTGCTGTCGCTGTCTGTGGCTTATGTGAAAAAGAAGAGGCGACATGTCCTGTAGCTCCAA
CTGACCTCTTGCCTACATCTGGGGCTTCTGAAGAAATATCCTCCATCGGAAGTTTAGTGATGGAGAGGAG
CACAGAACTGGGGAAGGAAGCCATTGCAGAGGCTCTGCTCAGAGAGGCTACTCTGATTTTAGCAAGGCCA
GATGCTTACAGCAGCCTTGGTGAGCTCTTGGAATCTGTGAACCAGAGAATCATAGAAACCACTTCTAAAA
CCCAGACCCTGTGCACAGAAAGTGTTCAAAGGAATGAACTGGCACACACCTTGTCCAATGTCATCCTCAA
GCACTCCGTGGATGAACTTCACCAGAAAACTACAATGGCTCACCCCACTGATGAAAGGCATCCCTGTGGA
ACTCTGGACACCTTGATGGAAAGTGTGAACCAGCTGCTGCACAATGTGATCTGCTTCACATTCAAAAAGA
TGAATCACATTGTAACACTCAGTGAGCATCCCTCATTTGATCAGGCTGCTGGTCAAGCCTGGGTAAAAGC
CTTTGCATGCCCCAGCAGCCAGCCTCTTAGCAATGCACACGGTACTGGCCTTGTCATCAGGAATCTTGTA
GAGGATGCATCTCCTAAGTCAAACAAGGGCGGAGCAAGGCCAGAACTGGTCAACAACCCCAGGTTGCAAT
CTGAATTCTCCTGCAGTCATAGAATGTTTGATTCAACTGCTAAGTCATTCCCCAAGGAAATATATCTGAA
AGGGATTATGGGAGAGGATACCAGGAACCCTCATCATACACTAAATTATGACAGCAATGAACGAAGAGCC
TCTACAGACCTAGGAAAATTGACAACAGCAAGCGAGGGTTGTAGTGGTTTCCAGGAAACTGAAGACAGCA
TTGTTCCAAACACCCAAGAGAAATACATCTGTGCCACACCCCTAAACAATGAAGCTCAAGTTAACCTATC
CTTATTAGGTGATGACCTGTCTGTTCCTGCTCAGTCTACTCTAGAGGCAAAGCAGTCCGAGGTCTATGGC
ATCACAGATTTTGCGGAAGAATTGGCAGAGACTGTTGTCTCCATGGCAACTGAAATTGCAGCAATCTGCC
TTGACAACTCCAATGGCAAACAGCCCTGGTTTTGTGCTTGGAAAAGAGGGAACGAGTTTTTAACGGCGCC
TAACGGATCCTGCCGATCCTTGAAGAGGAAGAAGGAAAACTCAAGCGCCGGAAGCACCGTGAGGAAACAC
AAGCCACCTCGCCTCAGTGAAATCAAGAGAAAAGCTGATGAGCACCCAGAGCTGAAAGAGAAGCTGATGA
ACAGAGTCATGGATGAGTCCATGAACCTCGAAGACATCCCTGATTCCGTCAGTACCTTTGCCAATGAAGT
GGCAGCCAAGATCATGAACCTCACAGAGTTTTCCATGGTGGATGGGGTGTGGCAAGGCCAGAGTTGTTCC
CGGACTCGGCTTCTGGGTGGCGATAGGTGGAACCGGCTGAAGGCCTCAAGCTGTGAGAGCATTCCTGAGG
AGGACTCTGAAGCCAGGGTCTTTGTAAACAGCCTGGGTTTGATGAGTACCTTAAGCCAACCAGTTAGCAG
GGCCAGCTCCGTCTCCAAACAGTCCAGCTGTGAGAGCATCACCGATGAGTTTTCCAGGTTCATGGTGAAA
CAGATGGAAAACGAAGGGAGAGGGTTTGAGTTGCTGCTGGATTACTACGCAGGCAAAAATGCCAGCAGTA
TCATGAGCTCAGCGATGCAGCAGGCATGCCAGAAAAACGACCACCTCAACGTGAGACCGAGCTGCCCCTC
TAAGCAATCCAGTACAGAGAGCATAACAGAGGAGTTCTATAGGTACATGTTAAGGGACATCGCGAAAGAA
AGCAAAGATGGTGCCTCCTCCAGACGTAGCAGCCATGATTGGACCACGGGCCTGCTGTCTCCTTCTACAC
GATCCCCTCTGTGTTACAGACAGTCATCTATGCCTGACAGCAGGTCGCCATGCTCCAGACTAACAGTAAA
TGCGCCTGTCAAAGCCAACTCCTTAGATGGCTTTGCCCAAAACTGCCCTCAAGATTCTGTAAATGTACAG
CCAGTCAGTAGGGCTTCCTCATCTGGCCTCTGCAAATCAGATTCCTGCTTGTATCGCAGAAGTGGGACTG
ACCAGATCACAAACATGCTAATTCATGAAACATGGGCCAGCTCCATTGAGGCTCTCATGAGAAAGAACAA
AATCATTGCTGATGATAGCGAGGCAGCTAATGCCAGTCCTGGCCCTGTTTCCAGTGGTTCTCCTTTGCAA
GTAGAGAAGAATGCCAACAGATTAGCCACCAGCAAAGGACACAGGGGGCCAACTCTGCTTGTACAGGAAT
CTGTTGATTACCAGAGAAAAGATGCTGTTACTGAAGGCAATCATTCCCCAGTGTCATCTCCAGGCAAAAC
AGCTCCTGTTAAAAAACCCAGTGATTTTGATCCTAGAAGAGAAACCTCTGCATGCCACAATGCTGCTGGT
CTCAACAGCCCTAGGCGGTCACTCTGCTCAAGGGATGTGCCTTTGATTCAGATAGAGACAGATCAGAAAG
AAGAGTGCATTGGAGAACCTGGACCTTTCCTTTCCCAAAGTGGCTCCCTAGAGGAAACAGAAGGCCACCA
ACCTGAAGAAACCATCCCAGATGTGGCCAGAAATGAAGACACAGCTCCGAGCACCTGTCAGAGCTCTCGT
GACAGCCTTGAGACCAGTGGGGAAGTAGAAGTGGAGGTCTTGAAAGAAGACATACCCCGAGATGAGTCCC
GGAACCCTCCTAGCAGCAGCGAGGAGAGTACAGGCAGCTGGTCCCAGCTGGCCAATGAGGAGGACATCCC
AGACGACACAAGCAGCTTTCTGCAGCTCAGCGAGCGGTCCATGAGTGAATTAGTAGAAGAAAAGGAGATT
CTTAAAGAACAATCAGAAAGCATAAAGGAACATGCCTCTGGACTGCCAGGGAGAGCTGCCAGCCCCCAGA
GGAGCCTACTGGTGATCAACTTTGACCTGGAGCCAGAGTGTCCTGATGCTGAGCTTCGAGCCACTCTGCA
GTGGATAGCTGCCTCCGAACTGGGGATCCCAACAATCTACTTTAAGAAATCTCAGGAAAGCAGAATTGAA
AAGTTTCTAGATGTTGTGAAGCTTGTTCAGCAGAAGTCCTGGAAGGTGGGAGATATATTTCACGCGGTTG
TCCAGTACTGCAAACTGCATGCAGAGCAGAAGGAGAGGACTCCGAGTCTCTTTGACTGGCTTCTGGAACT
AGGATAA

Translation (1658 aa):
MDVNSRLSVQSNVESPLMHEGSEPQQITSSAAGNLAGSITACKKVLRSNSLLESTDYWLQNQRTPCQIGF
VEDESENCASVCFVNLDVNKDACITENLQQKLVNVSPDLPNLISSMNVQQPKENEIVLLSGLASGNLQAD
FDVSQCPWLPDICLVQCARGNRPNSTNCIIFEINKFLIGLEVVQERQLHLETNVLKLEDDTNCSLSSIEE
DFLTASEHLEEEIEVDDCRSGLENTNVSANVLESKKPKETTQEGWDYHKEKLHCALGEKHIRKHRTPSTK
TEGSKENTEENTSLKSLNRLVRPSHLKSEVAGNKQLATNYSYPENIKGELETSQMLFIPRDAYLSMVKKD
VLSPCSVLSEQGGSHRDHDVTPNPLPPVQNGEASTGEYATNLAESVMQDAFIRLSQSQPTLPQESAVSFS
MRSALLPSGCCTKDMVVPRSWNELPKIVIVQSPDGSDTVPEPNVSSWPDMEFVETSGIFSADSSSRPTQS
ALEVALACAATVIGTISSPQATERFAMEQESLVSTYAQRGTGVQQTQVPQAFMAPSTTEYSFPSALCGMT
QVASAVAVCGLCEKEEATCPVAPTDLLPTSGASEEISSIGSLVMERSTELGKEAIAEALLREATLILARP
DAYSSLGELLESVNQRIIETTSKTQTLCTESVQRNELAHTLSNVILKHSVDELHQKTTMAHPTDERHPCG
TLDTLMESVNQLLHNVICFTFKKMNHIVTLSEHPSFDQAAGQAWVKAFACPSSQPLSNAHGTGLVIRNLV
EDASPKSNKGGARPELVNNPRLQSEFSCSHRMFDSTAKSFPKEIYLKGIMGEDTRNPHHTLNYDSNERRA
STDLGKLTTASEGCSGFQETEDSIVPNTQEKYICATPLNNEAQVNLSLLGDDLSVPAQSTLEAKQSEVYG
ITDFAEELAETVVSMATEIAAICLDNSNGKQPWFCAWKRGNEFLTAPNGSCRSLKRKKENSSAGSTVRKH
KPPRLSEIKRKADEHPELKEKLMNRVMDESMNLEDIPDSVSTFANEVAAKIMNLTEFSMVDGVWQGQSCS
RTRLLGGDRWNRLKASSCESIPEEDSEARVFVNSLGLMSTLSQPVSRASSVSKQSSCESITDEFSRFMVK
QMENEGRGFELLLDYYAGKNASSIMSSAMQQACQKNDHLNVRPSCPSKQSSTESITEEFYRYMLRDIAKE
SKDGASSRRSSHDWTTGLLSPSTRSPLCYRQSSMPDSRSPCSRLTVNAPVKANSLDGFAQNCPQDSVNVQ
PVSRASSSGLCKSDSCLYRRSGTDQITNMLIHETWASSIEALMRKNKIIADDSEAANASPGPVSSGSPLQ
VEKNANRLATSKGHRGPTLLVQESVDYQRKDAVTEGNHSPVSSPGKTAPVKKPSDFDPRRETSACHNAAG
LNSPRRSLCSRDVPLIQIETDQKEECIGEPGPFLSQSGSLEETEGHQPEETIPDVARNEDTAPSTCQSSR
DSLETSGEVEVEVLKEDIPRDESRNPPSSSEESTGSWSQLANEEDIPDDTSSFLQLSERSMSELVEEKEI
LKEQSESIKEHASGLPGRAASPQRSLLVINFDLEPECPDAELRATLQWIAASELGIPTIYFKKSQESRIE
KFLDVVKLVQQKSWKVGDIFHAVVQYCKLHAEQKERTPSLFDWLLELG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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