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Report for CCDS41208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41208.1 Public Mus musculus X Trappc2 23 108 98 CCDS HistoryNCBI Gene:66226Re-query CCDS DB by CCDS ID:41208.1Re-query CCDS DB by GeneID:66226See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112194.1 ENSMUSP00000107813.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112194.1Link to Ensembl Protein Viewer:ENSMUSP00000107813.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112194Re-query CCDS DB by Protein ID:ENSMUSP00000107813
Original member Current member EBI ENSMUST00000116495.7 ENSMUSP00000112195.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116495.7Link to Ensembl Protein Viewer:ENSMUSP00000112195.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116495Re-query CCDS DB by Protein ID:ENSMUSP00000112195
Original member Current member NCBI NM_025432.4 NP_079708.2 Accepted alive Link to Nucleotide Sequence:NM_025432.4Link to Protein Sequence:NP_079708.2Re-query CCDS DB by Nucleotide ID:NM_025432Re-query CCDS DB by Protein ID:NP_079708Link to BLAST:NP_079708.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079708.2 140 Q9CQP2 140 100% 0 0

Chromosomal Locations for CCDS 41208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166446810 166446902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166449788 166449932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166450629 166450714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166452137 166452235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTCTGGGAGCTTCTACTTCGTAATTGTTGGCCACCATGATAATCCAGTTTTTGAAATGGAATTTTTGC
CACCTGGGAAAGCAGAATCCAAAGATGATCACCGTCATCTGAACCAGTTTATAGCTCATGCTGCTCTTGA
CCTTGTGGACGAAAATATGTGGCTTTCGAACAACATGTACTTAAAAACGGTGGACAAATTTAATGAGTGG
TTTGTATCAGCCTTTGTCACTGCAGGGCATATGAGATTTATTATGCTTCATGATGTGAGGCAAGAAGATG
GGATAAAGAACTTCTTTACTGATGTCTATGATCTGTATATAAAGTTTGCAATGAATCCATTTTATGAACC
CAATTCTCCCATTCGATCGAGTGCATTCGACAGGAAAGTCCAGTTTCTTGGGAAGAAACACCTTTTAAGC
TAA

Translation (140 aa):
MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEW
FVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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