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Report for CCDS40540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40540.1 Public Mus musculus 9 Ubtfl1 23 108 98 CCDS HistoryNCBI Gene:546118Re-query CCDS DB by CCDS ID:40540.1Re-query CCDS DB by GeneID:546118See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098973.2 ENSMUSP00000096572.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098973.2Link to Ensembl Protein Viewer:ENSMUSP00000096572.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098973Re-query CCDS DB by Protein ID:ENSMUSP00000096572
Original member Current member EBI ENSMUST00000169398.2 ENSMUSP00000126540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169398.2Link to Ensembl Protein Viewer:ENSMUSP00000126540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169398Re-query CCDS DB by Protein ID:ENSMUSP00000126540
Original member Current member EBI ENSMUST00000164441.1 ENSMUSP00000129611.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164441.1Link to Ensembl Protein Viewer:ENSMUSP00000129611.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164441Re-query CCDS DB by Protein ID:ENSMUSP00000129611
Original member Current member NCBI NM_001033793.3 NP_001028965.1 Accepted alive Link to Nucleotide Sequence:NM_001033793.3Link to Protein Sequence:NP_001028965.1Re-query CCDS DB by Nucleotide ID:NM_001033793Re-query CCDS DB by Protein ID:NP_001028965Link to BLAST:NP_001028965.1
Original member Current member NCBI NM_001360216.1 NP_001347145.1 Accepted alive Link to Nucleotide Sequence:NM_001360216.1Link to Protein Sequence:NP_001347145.1Re-query CCDS DB by Nucleotide ID:NM_001360216Re-query CCDS DB by Protein ID:NP_001347145Link to BLAST:NP_001347145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028965.1 394 Q3USZ2 394 100% 0 0
NP_001347145.1 394 Q3USZ2 394 100% 0 0

Chromosomal Locations for CCDS 40540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 18409178 18410362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGACATCACTTGATAACCAAGGCCTTTGGTCTGAAAAAGACATTCTGAAGTTACTGGAATGCATGGAGC
ATAATATCCCATCAGATGACTCCAGAGAATTCAAAAAGAGCCAGGCCGATCTAAACTGGAGCAAAGTAGC
TTTTGGACTGTTTTCAGGAGAAATGTGCAAACAGAAATGGATGGAGATTTCTTATAATTTAAGGAAGTTC
CGCACACTGACAGAATTAGTGCAAGAAGCCAAGTTTTCTTTTACAAAAAAAACTCACAAAAATAAAATAC
TCACGGAGCATCCTGACCGACCCAAAAGACCCTTGACTGCCTATCTGCGCTTTTACAAGGAACAGAGAGC
CAAATACTGTCAGATGTACCCTAAGTACAGCAACGCACAGCTGACCAAAATCCTGGCTGAGAAATACCGT
CAGCTGCCAGCAGAGATAAAGCAGAGATATATCATGGACTTCAAGAAGGAGAAAGAAGACTTTCAGAAAA
AGATGAGGCAATTCAAGAAAAGACATCCTGTTTCAGGGCATCCTAAGAAATCTGTGGTGCCCCAGAGTCA
CCCAACCAAAGTCCCTACGAAGTCACAAGGAGATATAAAAAATGTAAAGTCTCTTGTAAAAACAGAATCT
CCCAGAACAGTTTCTTCAGATATGAAATTTCAGGGAGAACCCAGGAAACCCCCTATGAATGCATATCACA
AATTTCACCAAGAGTCATGGTCAAGTCCGGAGCTGAGGCATCTGTCCTTTAGGAAGCGCTGGGTTGAAAT
TAGCAGGCGTTGGCATCAAGTCCCAGAGAACGAGAAAGAGCATTATAGCAATCAGGTCAAGAGGCTACAG
AAACAATACAGGGTGAAGCTGGATCTCTGGCTCAAGAGATTGTCTCCTGAGGAATATGCTGCATACAAAG
AGGCAAAGGCCACCTGTGGTAAGCGAAAGAACATGAGCATGTCTGGAGGCAGAAGCTCCAAGTTTGGACG
AACAGAGCAGTCCTCCTCAGAGAAAGGCCTTCAAATAAAGCCTGGAGAGGTAGAGGAGCTATTAGATCCT
GGGACAGATTCCTCAGGGACTATTCAGGGTCATCATGATGGCGCCCAGTCATCCAGGCAAGATTTCACGG
ATGATAGTGAAGAAGACGACTCTAGCACCTCCTCAGATTCTAGTAGTACAGATGAAGATGATTAA

Translation (394 aa):
MTSLDNQGLWSEKDILKLLECMEHNIPSDDSREFKKSQADLNWSKVAFGLFSGEMCKQKWMEISYNLRKF
RTLTELVQEAKFSFTKKTHKNKILTEHPDRPKRPLTAYLRFYKEQRAKYCQMYPKYSNAQLTKILAEKYR
QLPAEIKQRYIMDFKKEKEDFQKKMRQFKKRHPVSGHPKKSVVPQSHPTKVPTKSQGDIKNVKSLVKTES
PRTVSSDMKFQGEPRKPPMNAYHKFHQESWSSPELRHLSFRKRWVEISRRWHQVPENEKEHYSNQVKRLQ
KQYRVKLDLWLKRLSPEEYAAYKEAKATCGKRKNMSMSGGRSSKFGRTEQSSSEKGLQIKPGEVEELLDP
GTDSSGTIQGHHDGAQSSRQDFTDDSEEDDSSTSSDSSSTDEDD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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