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Report for CCDS40424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40424.1 Public Mus musculus 8 Itfg1 23 108 98 CCDS HistoryNCBI Gene:71927Re-query CCDS DB by CCDS ID:40424.1Re-query CCDS DB by GeneID:71927See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034140.8 ENSMUSP00000034140.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034140.8Link to Ensembl Protein Viewer:ENSMUSP00000034140.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034140Re-query CCDS DB by Protein ID:ENSMUSP00000034140
Original member Current member NCBI NM_028007.3 NP_082283.2 Accepted alive Link to Nucleotide Sequence:NM_028007.3Link to Protein Sequence:NP_082283.2Re-query CCDS DB by Nucleotide ID:NM_028007Re-query CCDS DB by Protein ID:NP_082283Link to BLAST:NP_082283.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082283.2 610 Q99KW9 610 100% 0 0

Chromosomal Locations for CCDS 40424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85718868 85718927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85722631 85722748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85725514 85725596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85726166 85726290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85732373 85732451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85736125 85736168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85738117 85738225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85740228 85740378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85764235 85764407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85766958 85767052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85776140 85776221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85780516 85780577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85810545 85810639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85831183 85831257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85835021 85835078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85836346 85836491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85838928 85839000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85840534 85840738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGGCGGCAGGCCGGCTTCCTAGCGCCAGGGCGGTGCTGGCCCCGCTGTTCTTGGGGCTCGCGCTGCTGA
GCGTTGGGCCTGCCCCGGCGCGGGCTCTGCACAACGTCACGGCCGAGCTCTTTGGGGCTGAGGCCTGGGG
CACCCTGGCGGCCTTCGGTGACCTCAACTCCGACAAACAGACGGACCTCTTCGTGCTGCGGGAAAGAAAT
GACTTAATTGTCTTCTTGGCAGATCAGAGTGCACCCTATTTTAAACCCAAGGTAAAGGTATCCCTGAAGA
CTTTGAGTGCGTTGGTAACAAGTGTGGTCCCTGGTGATTATGATGGGGATTCACAAATGGATGTCCTGCT
CACATACTTTCCCCAAAATCATACCAACAGTGAACTAGGAGCTGTTATCTTTTGGGGACAAAATCAAACA
TTAGATCCTAAAAACATGACCATACTCAATAGGACTTTTCATGACCAACCACTGATTATGGACTTCAATG
GTGATCTAATTCCTGATGTGTTTGGTATCACAAATGAATCCAGCCAACCGCAGATACTGCTAGGAGGAGA
TTTATCATGGCATCCTGCCTTGACCACTAAGAGTAAAATGCGAGATCCACATTCCCATGCATTTATTGAT
CTGACTGAAGATTTTACAGCAGATTTATTCCTCACGACATTGACTGCCTCTAATGCCTTCCAGTTTGAGA
TATGGGAAAATTTGGGTGGAAACTTCTCTATCCATAGTGTCTTTGAAAAACCTAAAAATCTGGTGGTGGT
TGGACAGTCAGCATTTGCAGACTTTGATGGAGATGGACACATGGATCACTTGCTGCCAGGCTGTGAAGAT
AAGGACTGTCAGAAAAGTGCCATATATTTAATGAGATCTGGAACAGGACAGTGGGTTCCTGTGCTTCAGG
ATTTTAGCAATAAGGGTACACTCTGGGGCTTTGTGCCATTTGTGCATGAAGAACAACCAACCACAATACC
AATCCCACTCACACTTCACATTGGAGACTACAACATGGACGGCTACCCAGATGCTCTGGCTATATTGAAG
AATACATCTGGAAGCAATCAGCAAGCCTTTTTACTGGAGAACGTCCCATGCAATAATGCGAGCTGCGAAG
AAGTGCATCGGATGTTTAAAGTCTACTGGGACCTAGCAGGCCTAAATCTAATCAAAGACGCCATAGTTGC
CACCTTTTTTGATATTTATGAAGATGGAATCTTGGACATTATAGTCCTCAGTAAAGGATACACCAAGAAT
GATGTTGCCATCCATACACTCAAAAATAACTTTGAGGCAGATGCTTACTTTGTTAAAGTCATTGTTCTTA
GTGGTCTATGTTCTAATGACTGTCCTCGTAAGATAACACCTTTTGGAGTAAATCAGCCTGGACCTTATAT
CATGTACACAACAGTAGATGCAAATGGATATCTGAAAAACGGCTCAGCTGGACAGCTCAGCCAGTCAGCA
CACTTAGCTCTTCAGCTACCTTACAATGTACTTGGCTTAGGCCGAAGTGCCAATTTCCTGGATCATCTTT
TTGTTGGTATTCCCCGTCCATCTGGAGAGAAGTCTATAAGAAAACAAGAGTGGACAGCAATCATTCCAAA
TTCCCAGCTGATTGTCATTCCATATCCTCACAATGTCCCTCGAAGCTGGAGTGCCAAATTGTACCTGACA
CCAAGTAACATTGTCCTGCTGACTGCGGTAGCCCTCATTGGAGTCTGCATTTTTATCCTGGCAATAATCG
CCATTTTACATTGGCAGGAAAAGAAAGCCGATGACAGAGAAAAACGACAGGAAGCACATCGGTTTCATTT
TGATGCTATGTGA

Translation (610 aa):
MAAGRLPSARAVLAPLFLGLALLSVGPAPARALHNVTAELFGAEAWGTLAAFGDLNSDKQTDLFVLRERN
DLIVFLADQSAPYFKPKVKVSLKTLSALVTSVVPGDYDGDSQMDVLLTYFPQNHTNSELGAVIFWGQNQT
LDPKNMTILNRTFHDQPLIMDFNGDLIPDVFGITNESSQPQILLGGDLSWHPALTTKSKMRDPHSHAFID
LTEDFTADLFLTTLTASNAFQFEIWENLGGNFSIHSVFEKPKNLVVVGQSAFADFDGDGHMDHLLPGCED
KDCQKSAIYLMRSGTGQWVPVLQDFSNKGTLWGFVPFVHEEQPTTIPIPLTLHIGDYNMDGYPDALAILK
NTSGSNQQAFLLENVPCNNASCEEVHRMFKVYWDLAGLNLIKDAIVATFFDIYEDGILDIIVLSKGYTKN
DVAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYLKNGSAGQLSQSA
HLALQLPYNVLGLGRSANFLDHLFVGIPRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWSAKLYLT
PSNIVLLTAVALIGVCIFILAIIAILHWQEKKADDREKRQEAHRFHFDAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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