NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40097.1 Public Mus musculus 7 Sox6 23 108 98 CCDS HistoryNCBI Gene:20679Re-query CCDS DB by CCDS ID:40097.1Re-query CCDS DB by GeneID:20679See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106612.7 ENSMUSP00000102223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106612.7Link to Ensembl Protein Viewer:ENSMUSP00000102223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106612Re-query CCDS DB by Protein ID:ENSMUSP00000102223
Original member NCBI NM_001025560.2 NP_001020731.1 Updated not alive Link to Nucleotide Sequence:NM_001025560.2Link to Protein Sequence:NP_001020731.1Re-query CCDS DB by Nucleotide ID:NM_001025560Re-query CCDS DB by Protein ID:NP_001020731
Current member NCBI NM_001025560.3 NP_001020731.1 Accepted alive Link to Nucleotide Sequence:NM_001025560.3Link to Protein Sequence:NP_001020731.1Re-query CCDS DB by Nucleotide ID:NM_001025560Re-query CCDS DB by Protein ID:NP_001020731Link to BLAST:NP_001020731.1

Chromosomal Locations for CCDS 40097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 115476918 115477221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115486548 115486764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115489663 115489896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115512661 115512769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115541622 115541806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115544470 115544653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115550010 115550156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115580565 115580644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115597496 115597616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115659516 115659584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115662272 115662444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115701696 115701785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115777051 115777258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115801369 115801605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTACAGCGGATGGAGAGGAAGCAATGACCCAGGACT
TGACCTCAAGGGAAAAGGAAGAGGGCAGTGATCAACACCCGGCCTCCCATCTGCCTCTGCACCCCATAAT
GCACAACAAACCTCACTCTGAGGAGCTGCCTACACTTGTCAGTACCATTCAACAAGATGCTGACTGGGAC
AGCGTTCTGTCATCTCAGCAAAGAATGGAGTCAGAGAATAATAAGTTATGTTCCCTATATTCCTTCCGAA
ATACGTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGAGCGTGAAATAATGAACAGTGTTACTTT
TGGAACCCCGGAACGCCGCAAAGGGAGCCTTGCCGATGTGGTGGATACGCTGAAGCAGAAGAAGCTGGAG
GAGATGACTCGGACAGAACAAGAGGATTCCTCCTGCATGGAAAAACTACTTTCAAAAGATTGGAAGGAAA
AAATGGAAAGACTAAATACGAGTGAACTTCTTGGAGAAATCAAAGGTACACCTGAGAGCCTTGCAGAGAA
AGAACGGCAACTCTCCACCATGATTACCCAGCTGATCAGCTTGCGGGAGCAGCTCCTGGCAGCCCATGAT
GAACAGAAAAAGCTGGCAGCATCGCAGATCGAGAAACAGCGGCAGCAAATGGACCTTGCTCGCCAACAGC
AAGAACAGATCGCAAGACAACAGCAGCAACTTCTACAGCAGCAGCACAAGATTAATCTCCTGCAGCAACA
GATCCAGGTTCAGGGGCACATGCCTCCGCTCATGATCCCAATTTTTCCACATGACCAGCGGACCTTGGCA
GCAGCTGCTGCTGCCCAACAGGGATTCCTCTTCCCCCCTGGAATAACATACAAGCCAGGTGATAACTACC
CCGTACAGTTCATTCCGTCAACAATGGCAGCTGCTGCTGCTTCTGGACTCAGCCCTTTACAGCTTCAGCT
CTATGCCGCTCAGCTGGCCAGCATGCAGGTGTCACCTGGAGCAAAGATGCCATCAACTCCACAGCCACCA
AACTCGGCAGGGGCAGTCTCACCTACTGGGATAAAAAATGAAAAGAGAGGGACCAGCCCTGTAACTCAAG
TTAAGGATGAAACAACAGCCCAGCCGCTGAATCTCTCATCCCGGCCTAAGACAGCAGAGCCTGTGAAGTC
CCCAACATCTCCCACCCAGAACCTCTTCCCAGCCAGCAAAACCAGCCCTGTCAACCTGCCAAACAAAAGC
AGCATCCCCAGCCCCATTGGAGGAAGCCTGGGGAGAGGATCCTCTCTAGATATACTATCCAGTCTCAACT
CTCCTGCCCTGTTTGGGGACCAGGACACAGTGATGAAAGCCATTCAGGAGGCTCGGAAGATGCGAGAACA
GATCCAGCGGGAGCAACAACAGCAGCCACACGGAGTTGATGGGAAACTGTCCTCCATGAACAACATGGGG
CTGAGCAACTGCAGGACTGAGAAGGAAAGAACACGCTTTGAGAACCTGGGTCCCCAATTAACAGGAAAGT
CAAGTGAAGATGGAAAACTGGGCCCGGGTGTCATCGATCTCACTCGGCCAGAGGACGCAGAAGGAAGCAA
AGCAATGAATGGCTCTGCAGCTAAACTACAGCAGTATTATTGTTGGCCAACAGGAGGCGCCACTGTGGCT
GAAGCCCGTGTCTACAGGGATGCCCGCGGCCGTGCCAGCAGCGAACCCCACATCAAGCGACCAATGAATG
CGTTCATGGTTTGGGCAAAGGACGAAAGGAGGAAAATTCTTCAGGCCTTCCCTGACATGCATAACTCCAA
CATTAGCAAAATCTTAGGATCTCGCTGGAAATCCATGTCCAACCAGGAGAAGCAACCTTACTATGAAGAA
CAGGCCCGGCTAAGCAAAATCCACCTAGAGAAGTACCCAAACTACAAGTACAAACCCCGGCCGAAGCGCA
CATGCATCGTGGATGGCAAGAAGCTCCGGATTGGGGAGTACAAGCAACTGATGCGCTCGCGAAGGCAGGA
GATGCGACAGTTCTTCACTGTGGGGCAACAGCCTCAGATGCCCATCACCACAGGAACAGGTGTTGTGTAT
CCTGGTGCTATTACTATGGCAACGACCACACCATCACCTCAGATGACATCTGACTGCTCTAGCACCTCTG
CCAGCCCCGAGCCCAGCCTCCCTGTCATCCAGAGCACGTATGGTATGAAGATGGACGGCGCAAGCCTGGC
TGGGAACGACATGATTAATGGAGAGGATGAAATGGAAGCCTATGACGACTACGAAGATGATCCCAAATCA
GACTATAGCAGCGAGAATGAGGCCCCAGAGCCTGTCAGTGCCAACTGA

Translation (785 aa):
MSSKQATSPFACTADGEEAMTQDLTSREKEEGSDQHPASHLPLHPIMHNKPHSEELPTLVSTIQQDADWD
SVLSSQQRMESENNKLCSLYSFRNTSTSPHKPDEGSREREIMNSVTFGTPERRKGSLADVVDTLKQKKLE
EMTRTEQEDSSCMEKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHD
EQKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQRTLA
AAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQLYAAQLASMQVSPGAKMPSTPQPP
NSAGAVSPTGIKNEKRGTSPVTQVKDETTAQPLNLSSRPKTAEPVKSPTSPTQNLFPASKTSPVNLPNKS
SIPSPIGGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQPHGVDGKLSSMNNMG
LSNCRTEKERTRFENLGPQLTGKSSEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVA
EARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEE
QARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQMPITTGTGVVY
PGAITMATTTPSPQMTSDCSSTSASPEPSLPVIQSTYGMKMDGASLAGNDMINGEDEMEAYDDYEDDPKS
DYSSENEAPEPVSAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH