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Report for CCDS40013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40013.1 Public Mus musculus 7 Grm5 23 108 98 CCDS HistoryNCBI Gene:108071Re-query CCDS DB by CCDS ID:40013.1Re-query CCDS DB by GeneID:108071See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107263.8 ENSMUSP00000102884.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107263.8Link to Ensembl Protein Viewer:ENSMUSP00000102884.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107263Re-query CCDS DB by Protein ID:ENSMUSP00000102884
Original member Current member EBI ENSMUST00000125009.8 ENSMUSP00000118393.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125009.8Link to Ensembl Protein Viewer:ENSMUSP00000118393.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000125009Re-query CCDS DB by Protein ID:ENSMUSP00000118393
Original member Current member NCBI NM_001081414.2 NP_001074883.1 Accepted alive Link to Nucleotide Sequence:NM_001081414.2Link to Protein Sequence:NP_001074883.1Re-query CCDS DB by Nucleotide ID:NM_001081414Re-query CCDS DB by Protein ID:NP_001074883Link to BLAST:NP_001074883.1

Chromosomal Locations for CCDS 40013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 87602544 87603201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87803815 87804064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87975135 87975370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88026424 88026670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88036068 88036236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88039983 88040109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88074191 88075130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88129981 88130869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3516 nt):
ATGGTCCTTCTGTTGATTCTGTCAGTCCTACTTCTGAAAGAAGATGTACGAGGAAGTGCACAGTCCAGTG
AG
AGGAGGGTGGTGGCTCACATGCCAGGTGACATTATTATTGGAGCTCTCTTCTCGGTCCACCACCAACC
A
ACTGTGGACAAAGTTCATGAGAGGAAGTGTGGGGCAGTCCGTGAGCAGTATGGCATTCAGAGAGTGGAA
GCC
ATGCTGCATACCTTGGAAAGGATCAATTCAGATCCCACACTCTTGCCCAACATCACACTAGGCTGTG
AG
ATAAGAGATTCCTGCTGGCATTCTGCTGTGGCCCTAGAGCAAAGCATTGAGTTTATAAGGGATTCCCT
C
ATCTCTTCGGAAGAGGAAGAAGGCTTGGTACGCTGTGTAGATGGCTCTTCTTCCTTCCGCTCCAAGAAA
CCC
ATAGTGGGAGTCATTGGGCCTGGCTCGAGTTCTGTGGCCATTCAAGTTCAGAACTTGCTCCAGCTTT
TC
AACATACCTCAGATTGCTTACTCTGCAACTAGCATGGATTTGAGTGACAAGACTCTATTCAAGTACTT
C
ATGAGGGTTGTACCTTCGGATGCCCAGCAAGCCCGAGCCATGGTAGACATAGTGAAGAGATACAACTGG
ACT
TATGTCTCAGCTGTGCACACAGAAGGCAACTATGGAGAAAGTGGGATGGAGGCTTTCAAAGATATGT
CA
GCGAAGGAAGGGATTTGCATCGCCCACTCTTACAAAATCTACAGCAATGCTGGGGAACAGAGCTTTGA
C
AAGCTGTTGAAAAAGCTCAGAAGTCATTTACCTAAAGCCCGGGTGGTAGCCTGCTTCTGTGAAGGCATG
ACA
GTTCGAGGTCTGCTCATGGCCATGAGACGCTTGGGTCTAGCAGGGGAATTTCTACTTCTGGGCAGTG
AT
GGCTGGGCTGACAGGTATGACGTGACAGATGGGTATCAGCGAGAAGCTGTCGGTGGGATTACAATCAA
G
CTCCAGTCTCCTGATGTCAAGTGGTTTGATGATTATTATCTGAAGCTCCGGCCAGAAACAAACCTCAGA
AAC
CCTTGGTTTCAAGAATTTTGGCAGCATCGTTTTCAGTGCCGGCTAGAAGGGTTTGCACAGGAGAACA
GC
AAGTACAACAAGACTTGCAACAGTTCTCTAACTCTGAGAACGCATCATGTTCAAGATTCCAAAATGGG
A
TTTGTGATCAATGCAATCTATTCTATGGCTTATGGGCTCCACAACATGCAGATGTCCCTGTGTCCAGGC
TAT
GCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGGAAACTTTTGGACTCCCTGATGAAAACCA
AC
TTTACTGGAGTTTCCGGAGATATGATTCTATTTGATGAAAATGGAGACTCTCCAGGAAGGTATGAAAT
A
ATGAATTTCAAGGAAATGGGAAAAGATTATTTTGATTACATCAATGTTGGAAGTTGGGACAATGGGGAA
TTA
AAAATGGATGATGATGAAGTGTGGTCCAAGAAAAATAACATCATCAGATCTGTGTGCAGTGAACCGT
GT
GAGAAAGGACAGATAAAGGTGATCCGGAAGGGAGAAGTCAGCTGTTGTTGGACCTGCACACCTTGTAA
G
GAGAATGAGTATGTTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCCACTGACGAC
TTG
ACAGGTTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGGTGACCCTGAGCCCATTGCAGCTGTGG
TG
TTTGCCTGCCTCGGTCTGCTAGCCACCCTCTTCGTTACTGTAATCTTCATCATTTATCGGGACACTCC
A
GTGGTCAAGTCTTCCAGCAGGGAACTCTGCTACATTATCCTTGCTGGCATCTGCCTGGGTTACTTGTGT
ACC
TTCTGCCTCATTGCAAAGCCCAAACAGATTTACTGCTACCTTCAGAGAATTGGCATCGGTCTCTCTC
CA
GCCATGAGCTACTCAGCCCTTGTAACGAAGACCAACCGTATTGCAAGGATTCTAGCTGGCAGCAAGAA
G
AAGATCTGTACCAAAAAGCCCAGATTCATGAGCGCCTGTGCTCAGTTAGTGATCGCTTTCATTCTCATC
TGT
ATACAGTTGGGTATTATTGTGGCCCTCTTTATCATGGAGCCTCCGGATATAATGCATGACTATCCAA
GC
ATCCGAGAAGTCTACTTGATTTGTAACACCACCAACCTAGGGGTTGTCACTCCTCTTGGATACAATGG
A
TTATTGATTTTGAGTTGCACATTCTATGCGTTCAAGACCAGAAATGTTCCAGCCAACTTTAACGAGGCC
AAA
TATATTGCTTTCACCATGTACACAACCTGCATCATATGGCTGGCCTTTGTGCCTATCTACTTTGGCA
GC
AACTACAAAATCATCACCATGTGTTTCTCAGTCAGCCTCAGTGCCACAGTGGCCCTGGGTTGCATGTT
T
GTGCCGAAGGTGTACATCATCCTAGCCAAACCGGAGAGAAATGTGCGCAGCGCCTTCACAACCTCTACA
GTG
GTGCGCATGCACGTAGGAGATGGCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAGTCAACC
TG
TGGAAGAGGAGGGGCTCGTCTGGGGAAACCCTAAGCTCCAATGGAAAATCCGTGACTTGGGCCCAGAA
T
GAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCC
AAC
CAGACAGCAGTCATCAAACCCTTCCCCAAGAGCACAGAGAGCCGCGGGCAGGGTGCAGGGGCAGGTG
GT
GGCTCTGGCCCCGGTGCAGCTGGTGCTGGTAGCGCAGGATGCACAGCGACAGGCGGCCCAGAGCCACC
A
GACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAGGCAGAGGAGCGCTTCCCAGCGGCTGCCAGGCCG
CGC
TCGCCATCGCCCATCAGTACGCTGAGCCACCTGGCAGGCTCGGCGGGCCGCACAGACGACGACGCGC
CG
TCGCTGCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAG
C
GTGGTGACGCGCTTCACCGCCAACATCACCGAGCTCAACTCCATGATGTTGTCCACCGCGGCTGCGCCG
GGG
CCCCCTGGTACCCCTATCTGCTCTTCCTACCTGATCCCCAAAGAGATCCAGCTGCCCACGACCATGA
CG
ACCTTCGCAGAGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAGGAGCTCAGCCGGCGACAGGGCC
A
TCACCTGCCCAAGAGACGCCCGCAGGAGCTGAAGCCGCCCCAGGAAAACCGGATCTGGAGGAGCTGGTG
GCC
CTCACTCCACCATCGCCCTTCAGGGACTCGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAGTCT
CC
GAATCGGCCCTCTGCATCCCATCCTCTCCCAAATATGACACTCTCATCATCAGAGATTACACGCAGAG
T
TCTTCATCGTTGTGA


Translation (1171 aa):
MVLLLILSVLLLKEDVRGSAQSSERRVVAHMPGDIIIGALFSVHHQPTVDKVHERKCGAVREQYGIQRVE
A
MLHTLERINSDPTLLPNITLGCEIRDSCWHSAVALEQSIEFIRDSLISSEEEEGLVRCVDGSSSFRSKK
P
IVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNW
T
YVSAVHTE
GNYGESGMEAFKDMSAKEGICIAHSYKIYSNAGEQSFDKLLKKLRSHLPKARVVACFCEGM
T
VRGLLMAMRRLGLAGEFLLLG
SDGWADRYDVTDGYQREAVGGITIKLQSPDVKWFDDYYLKLRPETNLR
N
PWFQEFWQHRFQCRLEGFAQENSKYNKTCN
SSLTLRTHHVQDSKMGFVINAIYSMAYGLHNMQMSLCPG
Y
AGLCDAMKPIDGRKLLDSLMKTNFTGVSGDMILFDENGDSPG
RYEIMNFKEMGKDYFDYINVGSWDNGE
L
KMDDDEVWSKKNNIIRSVCSEPCEKGQIK
VIRKGEVSCCWTCTPCKENEYVFDEYTCKACQLGSWPTDD
L
T
GCDLIPVQYLRWGDPEPIAAVVFACLGLLATLFVTVIFIIYRDTPVVKSSSRELCYIILAGICLGYLC
T
FCLIAKPKQIYCYLQRIGIGLSPAMSYSALVTKTNRIARILAGSKKKICTKKPRFMSACAQLVIAFILI
C
IQLGIIVALFIMEPPDIMHDYPSIREVYLICNTTNLGVVTPLGYNGLLILSCTFYAFKTRNVPANFNEA
K
YIAFTMYTTCIIWLAFVPIYFGSNYKIITMCFSVSLSATVALGCMFVPKVYIILAKPERNVRSAFTTST
V
VRMHVGDGKSSSAASRSSSLVNLWKRRGSSGETL
SSNGKSVTWAQNEKSTRGQHLWQRLSVHINKKENP
N
QTAVIKPFPKSTESRGQGAGAGGGSGPGAAGAGSAGCTATGGPEPPDAGPKALYDVAEAEERFPAAARP
R
SPSPISTLSHLAGSAGRTDDDAPSLHSETAARSSSSQGSLMEQISSVVTRFTANITELNSMMLSTAAAP
G
PPGTPICSSYLIPKEIQLPTTMTTFAEIQPLPAIEVTGGAQPATGPSPAQETPAGAEAAPGKPDLEELV
A
LTPPSPFRDSVDSGSTTPNSPVSESALCIPSSPKYDTLIIRDYTQSSSSL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser