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Report for CCDS40008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40008.1 Public Mus musculus 7 BC048679 23 108 98 CCDS HistoryNCBI Gene:210321Re-query CCDS DB by CCDS ID:40008.1Re-query CCDS DB by GeneID:210321See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073406.11 ENSMUSP00000073114.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073406.11Link to Ensembl Protein Viewer:ENSMUSP00000073114.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073406Re-query CCDS DB by Protein ID:ENSMUSP00000073114
Original member Current member NCBI NM_183143.3 NP_898966.1 Accepted alive Link to Nucleotide Sequence:NM_183143.3Link to Protein Sequence:NP_898966.1Re-query CCDS DB by Nucleotide ID:NM_183143Re-query CCDS DB by Protein ID:NP_898966Link to BLAST:NP_898966.1

Chromosomal Locations for CCDS 40008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81495146 81495255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81495579 81495780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81496143 81496160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81496850 81496867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGAGCTTCAAGTGCCAGTCCCTCATCTCAACCCAGACCCTGGTAGGAGCATCCAGCACCATTCAGTTCT
TCTTCTCTGAGGCACTCATGGGTCAGAACTTCCAGGAGGTGGAGTTAGAAAACTACGAGCCTCAGCCTGG
AGACCTGTTCCTGTTCAAGTTGCAGACCCCTAAGGCACAGTGGTGCGGGGCCCACGTGGGTGTTTACTGC
GGCCAAGGAGAGATCATACACTTTGAGGGCGCGGTGGCGTTGACCCTAGGGTGCTGGAGAGCCGCGTGCG
AGAAGCTATGGACAACGATCCTCCTCCCTACCATCCCACTAGCAGCAACTGTGTGCACTTTGCACTGA

Translation (115 aa):
MSFKCQSLISTQTLVGASSTIQFFFSEALMGQNFQEVELENYEPQPGDLFLFKLQTPKAQWCGAHVGVYC
GQGEIIHFEGAVALTLGCWRAACEKLWTTILLPTIPLAATVCTLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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