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Report for CCDS39780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39780.1 Public Mus musculus 7 Bicra 23 108 98 CCDS HistoryNCBI Gene:243842Re-query CCDS DB by CCDS ID:39780.1Re-query CCDS DB by GeneID:243842See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094821.3 ENSMUSP00000092416.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094821.3Link to Ensembl Protein Viewer:ENSMUSP00000092416.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094821Re-query CCDS DB by Protein ID:ENSMUSP00000092416
Original member Current member EBI ENSMUST00000210781.1 ENSMUSP00000148012.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210781.1Link to Ensembl Protein Viewer:ENSMUSP00000148012.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210781Re-query CCDS DB by Protein ID:ENSMUSP00000148012
Original member Current member NCBI NM_001081418.1 NP_001074887.1 Accepted alive Link to Nucleotide Sequence:NM_001081418.1Link to Protein Sequence:NP_001074887.1Re-query CCDS DB by Nucleotide ID:NM_001081418Re-query CCDS DB by Protein ID:NP_001074887Link to BLAST:NP_001074887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074887.1 1578 F8VPZ9 1578 100% 0 0

Chromosomal Locations for CCDS 39780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 15971778 15972889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15975083 15975185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15975366 15975460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15975665 15975813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15977051 15977112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15978689 15978798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15979015 15979195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15979351 15979986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15986913 15987089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15987479 15989440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15993080 15993145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15996401 15996443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15996551 15996591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4737 nt):
ATGGATGATGAGGATGGGAGATGCTTACTAGACGTGATTTGTGATCCTCAGGCCCTCAATGATTTCTTGC
ATGGATCCGAGAAGCTGGACAGCGATGACCTCCTGGATGCCCCTGTGGAGGCCCAAAGTGCCTTCTATGA
AGGTCCTGGGCTCCATGTGCAGGAAGCTGCCGCCAACCACCTAAACCCTGAGCCCAGCCAGCCTGCCCCC
AGCGTGGACCTGGACTTCCTAGAAGATGATATCTTGGGCTCCCCTGCAGCAGGAGGAGGTGGAGGGGGCG
GCGGGGCCCCAGACCAGCCCTGTGACATCCTTCAGCAGAGTCTTCAGGAGGCCAACATCACAGAACAGAC
CCTGGAGGCTGAGGCTGAACTGGACCTGGGCCCCTTCCAGCTGCCCACCCTACAGCCCGCTGACAATGGG
GCAGGTGCTACTGGAGCCGCAGGAGCCACGGCAGTGACTGCAGGACCCCAGGCTCTCTTCCCAGGCAGCG
CGGATCTGCTGGGGCTGCAAGCCCCGCCCACTGTACTGACCCACCAGGCCCTGGTGCCACCCCAGGATGT
GGTCAACAAGGCCTTGAGCGTCCAGCCCTTCCTGCAGCCTGTGGGCCTGGGCAATGTGACCCTTCAGCCC
ATTTCAGGCCTCCAGGGCCTTCCCAATGGCAGTCCTGGGAATGCTGCAGCAGCCACCTTGGGTCTGACAC
CTATTCAAGTGGTGGGCCAGCCCGTCATGGCTCTCAACCCACCCACCTCCCAGCTCTTGGCAAAGCAGGT
ACCTGTCAGTGGCTACCTGGCCTCAGCAGCTGGTCCTTCAGAGCCAGTGACACTGGCATCTGCCGGCGTG
TCCCCCCAGGGAGCCGGCCTGGTCATCCAGAAAAATCTTCCAGCCGCAGTGACCACCACACTCAACGGGA
ACTCGGTGTTTGCCGGGACAGGGGCTGCCACTGCAGCAGCCAGTGGGGCACCCTCGGGACAGCCGCTGGC
GGTGGCCCCGGGCCTTGGCACATCACCACTGGTACAAGCACCCAGTGTGATTTTACACAGAACCCCTACG
CCTATCCAGCCCAAGCCTACAGGGGTCCTGCCCTCCAAACTCTACCAGCTGACACCCAAGCCCTTTCCCC
CTACCGGAGCCACCCTTACCATCCAGGGTGAACCAGGCACCTTGCCCCAGCAGCCTAAGGCCCCCCAGAA
CCTGACTTTTATGGCCACGGGCAAAGCTGGCCAGAATGTGGTGCTGTCTGGCTTCCCGGCACCGGCTTTG
CAGGCGAATGTGTTCAAGCAGCCACCAGTCACCACCACGGGGACAGCCCCGCCACAGCCACCAGGGGCCC
TCAGCAAACCCATGAGCGTCCACCTCCTCAATCAAGGCAGCAGCATCGTGATCCCAGCCCAGCACATGCT
GCCTGGCCAGAACCAGTTCTTGCTGCCAGGCACCCCAGCCGTACAACTCCCTCAGTCACTCTCTGCACTG
CCTGCCAACGTGGGAGGCCAGATCCTCACAGCTGCAGCACCACACGCAGGTGGACAGCTCATTGCCAACC
CTATCCTCACCAACCAGAACCTGGCAGGCCCACTGAGTCTGGGCCCAGTGCTGGCACCCCACTCTGGGGC
ACACAGCGCTGCACACATCCTCTCTGCAGCTCCCATCCAGGTGGGCCAGCCTGCCCTCTTCCAGATGCCT
GTGTCACTGGCCACTGGCAGCCTGCCTACTCAGAGCCAGCCGGCTCCCACTGGCCCCACAGCCACCACCG
TCCTCCAGGGCGTCACCCTGCCTCCCAGTGCTGTGGCCATGCTTAACACGCCTGATGGGCTAGTGCAACC
CTCCACTCCAGCTGCCACCACTGGGGAGGCCACACCAGTTCTGGCCGTTCAGCCTGCAACCCAGGTGCCC
CCTGCTGTCACCACACCACTGCCTATGGGTCTCCAACAGCCACAGGCACAGCAGCCTCCACAGGTCCCTA
CTCCACAGGCGGCCACCCAGCCTCAGGCCACCCCTCCTCAGGCCAGCCCAAGCCTGGCTTCCAGCCCAGA
GAAGATAGTCCTGGGGCAGGCGCCCCCTGCGGCCACAACGGCCATCCTCACTCAGGATTCCCTACAGATG
TTCCTGCCCCAGGAGAGGAGCCAGCAGCCCCTCTCTACAGAGGGTCCCCACCTCTCGGTGCCTGCCTCCG
TCATAGTCAGCGCCCCGCCTCCTGCCCAAGACCCAGCCCTGGCCACGCCCGTCACCAAAGGAGCTGGCCT
CGGCGCTCAGACCCCGGACAGCCGGGCTTCCCCAGCTCCGGCTCCCCAGATCCCTGCAGCTGCTCCACTG
AAAGCCCCTGGCCCCGCCTCCTCCCCCTCACTACCTCACCAGGCCCCCCTGGGAGACAGTCCCCACATGC
CCTCCCCACACCCTGCCAGGCCCCCTTCCCGCCCACCCTCAAGACCCCACTCACGCCCTCCATCCCAGCC
CCAGAGCCTGACCTGCCCACCCTCTGAGCCCACCCTGCACCCTTGCCCTCCACCCCAGGGTCCCCCAACT
CTACCTGGCATCTTTGTCATCCAGAATCAATTGGGCGCCCCACCACCAGCCAGCACCCCAGCCTCCACAG
CCCCGGGCCCACCCCAGCCTCCTCTGCGACCCCCATCCCAGCCTCCAGAGGGCCCACTGCCCCCAGCCTC
CCACCTCCCTCCTGCCTCCACCCCCTCGGCCGTGGCCTCCTCCTCTGAGCCTTCTGCCAGGTTGCCGGTC
CCCACACCCCCTGACTTCCAACTCCAGTTCCCACCGAGCCAGGGACCCCATAAGTCCCCTACTCCGCCAC
CAGCCCTCCACATGGTCCCTGAGCCCACGGCACCCCCTCCTCCACCACCTCGGACCTTCCAGATGGTAAC
CGCCCCCTTCCCAGCGTTGCCCCAGCCAAAAGCACTTCTGGAACGATTCCACCAGGTGCCATCTGGGATT
ATTCTCCAGAATAAGGCTGGGGGTACTCCCACCACCCCACAGACATCCACCACCCTGGGGACCCTCACCG
GTCCTACTGCCTCTGTGCTAGTCAGTGGACAGGCACCACCTGGGACTCCTGCCGCCTCTAGCCATGTCCC
AGCCTCCACACCTATGGCCACCACAGGCCTCCCTCCTCTACTTCCTGCCGAAAACAAAGCTTTTGCCAGC
AACCTTCCAACCCTGAGTGTGGCCAAAGCTACCGTGTCTGGGCCAGGGAAGCCCCCAGCAATTCAGTATG
ACAGCAAGTTGTGTAGCTTGAAGAAACAGCCCCTACTGCAACCCAGCAAAGAAGCCTGCTTCCTGGAGCA
TCTGCACAAACACCAGGGCTCTGTCCTGCACCCCGATTACAAGACAGCCTTCCCCTCCTTTGAGGACGCC
CTCCATCGCCTCCTGCCCTACCATGTCTACCAAGGCGCCCTCCCCTCCCCCAACGACTACCATAAAGTGG
ATGAAGAATTTGAGACTGTCTCTACGCAGCTGCTCAAACGCACCCAGGCCATGCTCAATAAATATCGGCT
TTTGCTTCTGGAAGAGTCCAGGAGAGTCAGTCCTTCTGCGGAGATGGTTATGATCGACCGAATGTTCATT
CAGGAGGAGAAGACCACCCTTGCCTTGGATAAGCAGCTTGCCAAGGAGAAGCCTGATGAGTACGTGTCTT
CCTCCCGCTCCCTTGGCTTCCCTGTCCCAGTGTCTTCCGAGGGCCACCGGCTCCCCAGCCATGGCCAGTC
GTCTTCATCCTCCACATCTGGAACGTCTGCCCAGCCCCCTCCTCATCTGCCCACCAAGCTAGTGATCCGG
CACGGTGGGGCCGGCGGCTCTCCCTCAGTGACCTGGGCCCGGGCATCCTCCTCCTTGTCATCCACTTCCT
CATCCTCCTCCTCATCCTCTGCTGCCTCATCCCTGGACGCAGATGAGGACGGCCCCATGCCCACCCGTAA
CCGGCCACCCATCAAGACCTATGAGGCCCGGAGCCGCATTGGTCTCAAACTCAAGATCAAACAAGAGGCG
GGGCTCAGCAAGGTGGTGCACAACACTGCACTGGATCCTGTGCATCAGCCCTTGCCGGCTCCAACCCCAG
CGAAAGGGGCGGAGCCTCCGCCACACCCAGCTCCGCCCCCACTCCCTCCTGCTACCCAGGCGCAGATGAA
TGGCACTCTGGACCATCCCCCACCCGCAGTACGCAAACCCACGGTGCCTGCGTCCTGCCCACGTCTACCA
CTACGCAAGACCTACCGAGAAAACATGGGCAATCCTGGTGCCGCCGAGGGTGCACAGGGACGGCCGCGGG
GTGCGGGCAGCCCCACCCCACTGCCCACCAAGGTAGACGAAGCCACCAGTGGGCTGATCCGGGAGCTGGC
AGCGGTGGAGGATGAACTATATCAGCGGGTTCTGAAGGGCGGCCCACCACCCCCGGAGACTCCAGCCTCC
GCTACCAGCCAGGGCCCCACTGAACCCAGTTGGGAAGCACCCGTGCTACCCCCAGCCAAACGACGCAAGT
CTGAGTCCCCGGACGTGGACCAGGCCAGCTTCTCTAGTGACAGCCCGCAGGATGATACACTTACTGAGCA
TTTGCAGAGTGCCATCGACAGCATCCTTAACCTGCAGCAGGCCCCCGGCCGGACACCCGCAGGCCCATAC
CCCCATACGGGGCCCACGCCTGGCACCCCCACATCCCCAGCGCCCCTGCACAGGCCTGACGCCTTCCCAC
CCTCTAGTCACAATGGTGGCCTCGGTGCCAGGACGTTGAACAGATAA

Translation (1578 aa):
MDDEDGRCLLDVICDPQALNDFLHGSEKLDSDDLLDAPVEAQSAFYEGPGLHVQEAAANHLNPEPSQPAP
SVDLDFLEDDILGSPAAGGGGGGGGAPDQPCDILQQSLQEANITEQTLEAEAELDLGPFQLPTLQPADNG
AGATGAAGATAVTAGPQALFPGSADLLGLQAPPTVLTHQALVPPQDVVNKALSVQPFLQPVGLGNVTLQP
ISGLQGLPNGSPGNAAAATLGLTPIQVVGQPVMALNPPTSQLLAKQVPVSGYLASAAGPSEPVTLASAGV
SPQGAGLVIQKNLPAAVTTTLNGNSVFAGTGAATAAASGAPSGQPLAVAPGLGTSPLVQAPSVILHRTPT
PIQPKPTGVLPSKLYQLTPKPFPPTGATLTIQGEPGTLPQQPKAPQNLTFMATGKAGQNVVLSGFPAPAL
QANVFKQPPVTTTGTAPPQPPGALSKPMSVHLLNQGSSIVIPAQHMLPGQNQFLLPGTPAVQLPQSLSAL
PANVGGQILTAAAPHAGGQLIANPILTNQNLAGPLSLGPVLAPHSGAHSAAHILSAAPIQVGQPALFQMP
VSLATGSLPTQSQPAPTGPTATTVLQGVTLPPSAVAMLNTPDGLVQPSTPAATTGEATPVLAVQPATQVP
PAVTTPLPMGLQQPQAQQPPQVPTPQAATQPQATPPQASPSLASSPEKIVLGQAPPAATTAILTQDSLQM
FLPQERSQQPLSTEGPHLSVPASVIVSAPPPAQDPALATPVTKGAGLGAQTPDSRASPAPAPQIPAAAPL
KAPGPASSPSLPHQAPLGDSPHMPSPHPARPPSRPPSRPHSRPPSQPQSLTCPPSEPTLHPCPPPQGPPT
LPGIFVIQNQLGAPPPASTPASTAPGPPQPPLRPPSQPPEGPLPPASHLPPASTPSAVASSSEPSARLPV
PTPPDFQLQFPPSQGPHKSPTPPPALHMVPEPTAPPPPPPRTFQMVTAPFPALPQPKALLERFHQVPSGI
ILQNKAGGTPTTPQTSTTLGTLTGPTASVLVSGQAPPGTPAASSHVPASTPMATTGLPPLLPAENKAFAS
NLPTLSVAKATVSGPGKPPAIQYDSKLCSLKKQPLLQPSKEACFLEHLHKHQGSVLHPDYKTAFPSFEDA
LHRLLPYHVYQGALPSPNDYHKVDEEFETVSTQLLKRTQAMLNKYRLLLLEESRRVSPSAEMVMIDRMFI
QEEKTTLALDKQLAKEKPDEYVSSSRSLGFPVPVSSEGHRLPSHGQSSSSSTSGTSAQPPPHLPTKLVIR
HGGAGGSPSVTWARASSSLSSTSSSSSSSSAASSLDADEDGPMPTRNRPPIKTYEARSRIGLKLKIKQEA
GLSKVVHNTALDPVHQPLPAPTPAKGAEPPPHPAPPPLPPATQAQMNGTLDHPPPAVRKPTVPASCPRLP
LRKTYRENMGNPGAAEGAQGRPRGAGSPTPLPTKVDEATSGLIRELAAVEDELYQRVLKGGPPPPETPAS
ATSQGPTEPSWEAPVLPPAKRRKSESPDVDQASFSSDSPQDDTLTEHLQSAIDSILNLQQAPGRTPAGPY
PHTGPTPGTPTSPAPLHRPDAFPPSSHNGGLGARTLNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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