NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39268.1 Public Mus musculus 5 Mlxip 23 108 98 CCDS HistoryNCBI Gene:208104Re-query CCDS DB by CCDS ID:39268.1Re-query CCDS DB by GeneID:208104See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111596.7 ENSMUSP00000107223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111596.7Link to Ensembl Protein Viewer:ENSMUSP00000107223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111596Re-query CCDS DB by Protein ID:ENSMUSP00000107223
Original member Current member NCBI NM_177582.3 NP_808250.1 Accepted alive Link to Nucleotide Sequence:NM_177582.3Link to Protein Sequence:NP_808250.1Re-query CCDS DB by Nucleotide ID:NM_177582Re-query CCDS DB by Protein ID:NP_808250Link to BLAST:NP_808250.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808250.1 614 Q2VPU4-2 614 99.8371% 0 1

Chromosomal Locations for CCDS 39268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123394930 123395342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123440036 123440142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123440813 123440898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123442282 123442371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123442728 123442769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123443030 123443201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123443876 123443965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123444445 123444536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123445468 123446220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGGCTGCCGACGTTTTCATGTGTTCGCCGCGCCGGCCCCGCAGTCGGGGCCGTTCGGTGCTGCTCAAGC
CTCAGGTGCCCGAGGACGACGACGACTCGGACACAGACGAGCCGTCTCCGCCGCCCCCCTCCGGCGTGGC
CACTTCAGCCCGGGCCCACGCGAGCGCCGCGCCGCTGCCGCCTCGGGCCGGCCCGGGCCGCGAGGAGCCT
CCGCGCCGACAGCAGATCATCCACAGCGGCCACTTCATGGTGTCCTCTCCGCACCGCGAGCACCCGCCCA
AGAAGGGCTATGATTTCGACACGGTCAACAAGCAGACGTGCCAGACCTATAGCTTCGGCAAGACCAGCTC
CTGCCACTTGTCCATCGATGCGTCGCTCACCAAGCTCTTCGAGTGCATGACCCTGGCCTACAGTGGGAAA
TTAGTGTCTCCAAAGTGGAAAAATTTCAAGGGCCTGAAGCTCCAGTGGCGGGACAAGATCCGGCTCAACA
ACGCCATCTGGAGGGCATGGTATATGCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCCACTTTGTCAC
CCCACTAGATGGCTCTGTTGATGTAGATGAACACCGTCGGCCAGAGGCCATCACCACAGAGGGCAAGTAC
TGGAAAAGCCGCATTGAGATTGTGATTCGAGAGTACCACAAGTGGAGAACCTACTTCAAGAAAAGGCTGC
AGCAGCACAAGGATGAGGACCTTTCTAGCCTGGCCCAGGACGATGACATGCTGTATTGGCATAAACATGG
GGATGGCTGGAAAACCCCAGTCCCCATGGAGGAGGACTCACTGCTGGACACAGACATGCTCATGTCAGAA
TTCAGCGACACTCTCTTCTCCACACTCTCTTCACACCAACCCGTGGCCTGGCCCAACCCACGAGAAATAG
CACATCTGGGAAACGCAGACATGATCCAGCCAGGCCTGATCCCTTTGCAACCCAACCTGGACTTCATGGA
CACCTTTGAGCCTTTCCAGGATCTCTTCTCCTCCAGCCGATCCATTTTTGGCTCCATGTTGCCTCCTCCT
TCATCATTACCTGCCGCAGATCCTAGCAGCCCACCTTCTCAGGGGAACATCTTGCCAAATACAGCTCTCC
CTCCTGCGAGCCTGCCCAATAGCCTCATTACATCTTCTGCAGCCCCCTCCCTGGATCCCACAGAGGGCCA
GGGTTGTGAACGCACATCCCAAACGGTGGACCCGTTTATTCAGCCTGCAGACTTTGGTCCCTCTGAGCCA
CCACTGAGTGTCCCACAGCCCTTCCTCCCTGTCTTTACGATGACCTTACTTTCCCCTGGCCCCGCCCCAG
CACCTGTTCCAACTGCATTGCCCTTAGTTCCTTCGCCTGCCCCTACTCTAAACCCCCCAACTCCACCAGC
TTTCCTGCAGCCACAGAAGTTTGCTGGAGTCAGCAAATCCACCCCTGTTATTACCCACACAGCCTCTGCA
ACCCTTACCCATGATGCTTCTGCCACCACCTTCAGCCAGAACCAGGGCCTTGTTATCACAGCACACCATC
CAACCCCCTCCTCATCCCCCTGTGCTTTGGCACTGTCACCCGTACCCCAGCCACCAGCCGTGGGACCTCC
CCAACCTCATTTAACTTTTATACACCCCAAACCTGTGTCCTTGACTGGAGTGAGACACAAGCAGCCCCCC
AAAATAGTGCCTGCTCCTAAACCTGAGCCTGTCTCCTTGGTGTTGAAGAATGCCTGCATTGCTCCAGGTG
AGTTGGTTGGGGGTGTGGTCAGCCAGAATTGCCTAGGGAGCAATGTTTCCCTTTCTCTAAGGCTTTACAT
TGGGAAGAACTCCCTTCCCACTTAA

Translation (614 aa):
MAADVFMCSPRRPRSRGRSVLLKPQVPEDDDDSDTDEPSPPPPSGVATSARAHASAAPLPPRAGPGREEP
PRRQQIIHSGHFMVSSPHREHPPKKGYDFDTVNKQTCQTYSFGKTSSCHLSIDASLTKLFECMTLAYSGK
LVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRRPEAITTEGKY
WKSRIEIVIREYHKWRTYFKKRLQQHKDEDLSSLAQDDDMLYWHKHGDGWKTPVPMEEDSLLDTDMLMSE
FSDTLFSTLSSHQPVAWPNPREIAHLGNADMIQPGLIPLQPNLDFMDTFEPFQDLFSSSRSIFGSMLPPP
SSLPAADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEP
PLSVPQPFLPVFTMTLLSPGPAPAPVPTALPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITHTASA
TLTHDASATTFSQNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPPQPHLTFIHPKPVSLTGVRHKQPP
KIVPAPKPEPVSLVLKNACIAPGELVGGVVSQNCLGSNVSLSLRLYIGKNSLPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH