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Report for CCDS38539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38539.1 Public Mus musculus 3 Selenbp2 23 108 98 CCDS HistoryNCBI Gene:20342Re-query CCDS DB by CCDS ID:38539.1Re-query CCDS DB by GeneID:20342See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090848.9 ENSMUSP00000088358.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090848.9Link to Ensembl Protein Viewer:ENSMUSP00000088358.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090848Re-query CCDS DB by Protein ID:ENSMUSP00000088358
Original member Current member NCBI NM_019414.2 NP_062287.1 Accepted alive Link to Nucleotide Sequence:NM_019414.2Link to Protein Sequence:NP_062287.1Re-query CCDS DB by Nucleotide ID:NM_019414Re-query CCDS DB by Protein ID:NP_062287Link to BLAST:NP_062287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062287.1 472 Q63836 472 99.7881% 0 1

Chromosomal Locations for CCDS 38539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94693659 94693662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94696794 94696850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94696992 94697104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94697305 94697490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94698043 94698163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94699530 94699712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94699938 94700116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94702320 94702398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94702481 94702602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94703487 94703579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94703722 94703840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94704054 94704216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCTACAAAATGCACAAAGTGTGGTCCAGGTTACCCCACCCCTCTGGAGGCCATGAAAGGACCCCGAG
AGGAGATTGTCTACTTGCCCTGCATTTACCGGAACACAGGCACCGAAGCCCCGGATTATTTGGCCACTGT
GGATGTAGACCCTAAGTCTCCCCAGTATAGCCAGGTCATCCACAGGTTGCCCATGCCCTACCTGAAGGAC
GAGCTGCACCACTCAGGATGGAACACCTGCAGCAGCTGCTTTGGGGACAGCACGAAGTCACGCAACAAGC
TGATACTGCCTGGTCTCATGTCCTCCCGCATCTACGTGGTGGATGTGGGCTCTGAGCCTCGTGCCCCGAA
GTTGCACAAGGTCATTGAAGCCAGTGAAATCCAAGCCAAGTGCAACGTGAGCAATACGCACACCAGCCAC
TGCCTGGCCAGTGGAGAAGTCATGGTCAACACCTTGGGGGATCTCCAGGGTAATGGCAAAGGGAGTTTTG
TGCTGCTGGATGGGGAGACCTTCGAGGTGAAAGGGACATGGGAGAAGCCTGGGGGTGCATCTCCAATGGG
CTACGACTTCTGGTACCAGCCTCGACACAATGTCATGGTCAGCACTGAATGGGCAGCTCCCAATGTCTTC
AAAGATGGCTTCAACCCGGCTCATGTGGAGGCTGGGCTGTATGGGAGCCGCATATTTGTGTGGGACTGGC
AGCGCCATGAGATTATCCAGACCCTGCAAATGACAGATGGGCTGATACCCCTGGAGATCCGTTTCCTGCA
CGACCCAAGTGCCACCCAGGGTTTTGTAGGCTGTGCCCTCAGCTCCAACATCCAGCGCTTCTACAAGAAT
GAGGAAGGCACTTGGTCAGTGGAGAAGGTGATCCAAGTGCCCTCCAAGAAAGTGAAGGGCTGGATGTTGC
CAGAAATGCCTGGTTTGATCACCGACATCCTGCTGTCCCTGGATGACCGCTTCCTTTACTTCAGCAACTG
GCTGCATGGGGACATTCGGCAGTATGACATCTCTAACCCACAGAAGCCCCGCCTCACTGGGCAGATCTTC
CTTGGGGGCAGCATTGTTAGAGGAGGCTCTGTGCAAGTGCTGGAGGACCAAGAGTTAACCTGTCAGCCGG
AGCCCCTAGTGGTCAAGGGAAAACGAATTCCTGGAGGCCCTCAGATGATCCAGCTCAGCTTAGATGGCAA
GCGTCTTTACGCCACTACATCACTGTACAGCGACTGGGACAAGCAGTTTTACCCTGACCTCATTAGGGAA
GGCTCCGTGATGCTTCAAGTTGATGTAGACACAGTAAATGGAGGGCTGAAGTTGAACCCCAACTTTCTGG
TGGACTTTGGGAAGGAGCCCCTTGGGCCAGCACTGGCTCACGAGCTTCGTTACCCAGGGGGTGACTGCAG
TTCTGATATCTGGATCTGA

Translation (472 aa):
MATKCTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKD
ELHHSGWNTCSSCFGDSTKSRNKLILPGLMSSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSH
CLASGEVMVNTLGDLQGNGKGSFVLLDGETFEVKGTWEKPGGASPMGYDFWYQPRHNVMVSTEWAAPNVF
KDGFNPAHVEAGLYGSRIFVWDWQRHEIIQTLQMTDGLIPLEIRFLHDPSATQGFVGCALSSNIQRFYKN
EEGTWSVEKVIQVPSKKVKGWMLPEMPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLTGQIF
LGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSDWDKQFYPDLIRE
GSVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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